Patterns of instability of expanded CAG repeats at the ERDA1 locus in general populations

Ranjan Deka, Sun Guangyun, Jonathan Wiest, Diane Smelser, Su Chunhua, Yixi Zhong, Ranajit Chakraborty

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15 Scopus citations

Abstract

A highly polymorphic CAG repeat locus, ERDA1, was recently described on human chromosome 17q21.3, with alleles as large as 50-90 repeats and without any disease association in the general population. We have studied allelic distribution at this locus in five human populations and have characterized the mutational patterns by direct observation of 731 meioses. The data show that large alleles (≥40 CAG repeats) are generally most common in Asian populations, less common in populations of European ancestry, and least common among Africans. We have observed a high intergenerational instability (46.3% ± 5.1%) of the large alleles. Although the mutation rate is not dependent on parental sex, paternal transmissions have predominantly resulted in contractions, whereas maternal transmissions have yielded expansions. Within this class of large alleles, the mutation rate increases concomitantly with increasing allele size, but the magnitude of repeat size change does not depend on the size of the progenitor allele. Sequencing of specific alleles reveals that the intermediate-sized alleles (30-40 repeats) have CAT/CAC interruptions within the CAG-repeat array. These results indicate that expansion and instability of trinucleotide repeats are not exclusively disease-associated phenomena. The implications of the existence of massively expanded alleles in the general populations are not yet understood.

Original languageEnglish
Pages (from-to)192-198
Number of pages7
JournalAmerican Journal of Human Genetics
Volume65
Issue number1
DOIs
StatePublished - 1999

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    Deka, R., Guangyun, S., Wiest, J., Smelser, D., Chunhua, S., Zhong, Y., & Chakraborty, R. (1999). Patterns of instability of expanded CAG repeats at the ERDA1 locus in general populations. American Journal of Human Genetics, 65(1), 192-198. https://doi.org/10.1086/302453