Abstract
A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard.
Original language | English |
---|---|
Pages (from-to) | 625-631 |
Number of pages | 7 |
Journal | Nature Chemical Biology |
Volume | 11 |
Issue number | 9 |
DOIs | |
State | Published - 18 Aug 2015 |
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Minimum Information about a Biosynthetic Gene cluster. / Medema, Marnix H.; Kottmann, Renzo; Yilmaz, Pelin; Cummings, Matthew; Biggins, John B.; Blin, Kai; De Bruijn, Irene; Chooi, Yit Heng; Claesen, Jan; Coates, R. Cameron; Cruz-Morales, Pablo; Duddela, Srikanth; Düsterhus, Stephanie; Edwards, Daniel J.; Fewer, David P.; Garg, Neha; Geiger, Christoph; Gomez-Escribano, Juan Pablo; Greule, Anja; Hadjithomas, Michalis; Haines, Anthony S.; Helfrich, Eric J.N.; Hillwig, Matthew L.; Ishida, Keishi; Jones, Adam C.; Jones, Carla S.; Jungmann, Katrin; Kegler, Carsten; Kim, Hyun Uk; Kötter, Peter; Krug, Daniel; Masschelein, Joleen; Melnik, Alexey V.; Mantovani, Simone M.; Monroe, Emily A.; Moore, Marcus; Moss, Nathan; Nützmann, Hans Wilhelm; Pan, Guohui; Pati, Amrita; Petras, Daniel; Reen, F. Jerry; Rosconi, Federico; Rui, Zhe; Tian, Zhenhua; Tobias, Nicholas J.; Tsunematsu, Yuta; Wiemann, Philipp; Wyckoff, Elizabeth; Yan, Xiaohui; Yim, Grace; Yu, Fengan; Xie, Yunchang; Aigle, Bertrand; Apel, Alexander K.; Balibar, Carl J.; Balskus, Emily P.; Barona-Gómez, Francisco; Bechthold, Andreas; Bode, Helge B.; Borriss, Rainer; Brady, Sean F.; Brakhage, Axel A.; Caffrey, Patrick; Cheng, Yi Qiang; Clardy, Jon; Cox, Russell J.; De Mot, René; Donadio, Stefano; Donia, Mohamed S.; Van Der Donk, Wilfred A.; Dorrestein, Pieter C.; Doyle, Sean; Driessen, Arnold J.M.; Ehling-Schulz, Monika; Entian, Karl Dieter; Fischbach, Michael A.; Gerwick, Lena; Gerwick, William H.; Gross, Harald; Gust, Bertolt; Hertweck, Christian; Höfte, Monica; Jensen, Susan E.; Ju, Jianhua; Katz, Leonard; Kaysser, Leonard; Klassen, Jonathan L.; Keller, Nancy P.; Kormanec, Jan; Kuipers, Oscar P.; Kuzuyama, Tomohisa; Kyrpides, Nikos C.; Kwon, Hyung Jin; Lautru, Sylvie; Lavigne, Rob; Lee, Chia Y.; Linquan, Bai; Liu, Xinyu; Liu, Wen; Luzhetskyy, Andriy; Mahmud, Taifo; Mast, Yvonne; Méndez, Carmen; Metsä-Ketelä, Mikko; Micklefield, Jason; Mitchell, Douglas A.; Moore, Bradley S.; Moreira, Leonilde M.; Müller, Rolf; Neilan, Brett A.; Nett, Markus; Nielsen, Jens; O'Gara, Fergal; Oikawa, Hideaki; Osbourn, Anne; Osburne, Marcia S.; Ostash, Bohdan; Payne, Shelley M.; Pernodet, Jean Luc; Petricek, Miroslav; Piel, Jörn; Ploux, Olivier; Raaijmakers, Jos M.; Salas, José A.; Schmitt, Esther K.; Scott, Barry; Seipke, Ryan F.; Shen, Ben; Sherman, David H.; Sivonen, Kaarina; Smanski, Michael J.; Sosio, Margherita; Stegmann, Evi; Süssmuth, Roderich D.; Tahlan, Kapil; Thomas, Christopher M.; Tang, Yi; Truman, Andrew W.; Viaud, Muriel; Walton, Jonathan D.; Walsh, Christopher T.; Weber, Tilmann; Van Wezel, Gilles P.; Wilkinson, Barrie; Willey, Joanne M.; Wohlleben, Wolfgang; Wright, Gerard D.; Ziemert, Nadine; Zhang, Changsheng; Zotchev, Sergey B.; Breitling, Rainer; Takano, Eriko; Glöckner, Frank Oliver.
In: Nature Chemical Biology, Vol. 11, No. 9, 18.08.2015, p. 625-631.Research output: Contribution to journal › Review article › peer-review
TY - JOUR
T1 - Minimum Information about a Biosynthetic Gene cluster
AU - Medema, Marnix H.
AU - Kottmann, Renzo
AU - Yilmaz, Pelin
AU - Cummings, Matthew
AU - Biggins, John B.
AU - Blin, Kai
AU - De Bruijn, Irene
AU - Chooi, Yit Heng
AU - Claesen, Jan
AU - Coates, R. Cameron
AU - Cruz-Morales, Pablo
AU - Duddela, Srikanth
AU - Düsterhus, Stephanie
AU - Edwards, Daniel J.
AU - Fewer, David P.
AU - Garg, Neha
AU - Geiger, Christoph
AU - Gomez-Escribano, Juan Pablo
AU - Greule, Anja
AU - Hadjithomas, Michalis
AU - Haines, Anthony S.
AU - Helfrich, Eric J.N.
AU - Hillwig, Matthew L.
AU - Ishida, Keishi
AU - Jones, Adam C.
AU - Jones, Carla S.
AU - Jungmann, Katrin
AU - Kegler, Carsten
AU - Kim, Hyun Uk
AU - Kötter, Peter
AU - Krug, Daniel
AU - Masschelein, Joleen
AU - Melnik, Alexey V.
AU - Mantovani, Simone M.
AU - Monroe, Emily A.
AU - Moore, Marcus
AU - Moss, Nathan
AU - Nützmann, Hans Wilhelm
AU - Pan, Guohui
AU - Pati, Amrita
AU - Petras, Daniel
AU - Reen, F. Jerry
AU - Rosconi, Federico
AU - Rui, Zhe
AU - Tian, Zhenhua
AU - Tobias, Nicholas J.
AU - Tsunematsu, Yuta
AU - Wiemann, Philipp
AU - Wyckoff, Elizabeth
AU - Yan, Xiaohui
AU - Yim, Grace
AU - Yu, Fengan
AU - Xie, Yunchang
AU - Aigle, Bertrand
AU - Apel, Alexander K.
AU - Balibar, Carl J.
AU - Balskus, Emily P.
AU - Barona-Gómez, Francisco
AU - Bechthold, Andreas
AU - Bode, Helge B.
AU - Borriss, Rainer
AU - Brady, Sean F.
AU - Brakhage, Axel A.
AU - Caffrey, Patrick
AU - Cheng, Yi Qiang
AU - Clardy, Jon
AU - Cox, Russell J.
AU - De Mot, René
AU - Donadio, Stefano
AU - Donia, Mohamed S.
AU - Van Der Donk, Wilfred A.
AU - Dorrestein, Pieter C.
AU - Doyle, Sean
AU - Driessen, Arnold J.M.
AU - Ehling-Schulz, Monika
AU - Entian, Karl Dieter
AU - Fischbach, Michael A.
AU - Gerwick, Lena
AU - Gerwick, William H.
AU - Gross, Harald
AU - Gust, Bertolt
AU - Hertweck, Christian
AU - Höfte, Monica
AU - Jensen, Susan E.
AU - Ju, Jianhua
AU - Katz, Leonard
AU - Kaysser, Leonard
AU - Klassen, Jonathan L.
AU - Keller, Nancy P.
AU - Kormanec, Jan
AU - Kuipers, Oscar P.
AU - Kuzuyama, Tomohisa
AU - Kyrpides, Nikos C.
AU - Kwon, Hyung Jin
AU - Lautru, Sylvie
AU - Lavigne, Rob
AU - Lee, Chia Y.
AU - Linquan, Bai
AU - Liu, Xinyu
AU - Liu, Wen
AU - Luzhetskyy, Andriy
AU - Mahmud, Taifo
AU - Mast, Yvonne
AU - Méndez, Carmen
AU - Metsä-Ketelä, Mikko
AU - Micklefield, Jason
AU - Mitchell, Douglas A.
AU - Moore, Bradley S.
AU - Moreira, Leonilde M.
AU - Müller, Rolf
AU - Neilan, Brett A.
AU - Nett, Markus
AU - Nielsen, Jens
AU - O'Gara, Fergal
AU - Oikawa, Hideaki
AU - Osbourn, Anne
AU - Osburne, Marcia S.
AU - Ostash, Bohdan
AU - Payne, Shelley M.
AU - Pernodet, Jean Luc
AU - Petricek, Miroslav
AU - Piel, Jörn
AU - Ploux, Olivier
AU - Raaijmakers, Jos M.
AU - Salas, José A.
AU - Schmitt, Esther K.
AU - Scott, Barry
AU - Seipke, Ryan F.
AU - Shen, Ben
AU - Sherman, David H.
AU - Sivonen, Kaarina
AU - Smanski, Michael J.
AU - Sosio, Margherita
AU - Stegmann, Evi
AU - Süssmuth, Roderich D.
AU - Tahlan, Kapil
AU - Thomas, Christopher M.
AU - Tang, Yi
AU - Truman, Andrew W.
AU - Viaud, Muriel
AU - Walton, Jonathan D.
AU - Walsh, Christopher T.
AU - Weber, Tilmann
AU - Van Wezel, Gilles P.
AU - Wilkinson, Barrie
AU - Willey, Joanne M.
AU - Wohlleben, Wolfgang
AU - Wright, Gerard D.
AU - Ziemert, Nadine
AU - Zhang, Changsheng
AU - Zotchev, Sergey B.
AU - Breitling, Rainer
AU - Takano, Eriko
AU - Glöckner, Frank Oliver
N1 - Publisher Copyright: © 2015 Nature America, Inc. All rights reserved. Copyright: Copyright 2015 Elsevier B.V., All rights reserved.
PY - 2015/8/18
Y1 - 2015/8/18
N2 - A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard.
AB - A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard.
UR - http://www.scopus.com/inward/record.url?scp=84939557642&partnerID=8YFLogxK
U2 - 10.1038/nchembio.1890
DO - 10.1038/nchembio.1890
M3 - Review article
C2 - 26284661
AN - SCOPUS:84939557642
VL - 11
SP - 625
EP - 631
JO - Nature Chemical Biology
JF - Nature Chemical Biology
SN - 1552-4450
IS - 9
ER -