Massively parallel sequencing-enabled mixture analysis of mitochondrial DNA samples

Jennifer Churchill Cihlar, Monika Stoljarova, Jonathan L. King, Bruce Budowle

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

The mitochondrial genome has a number of characteristics that provide useful information to forensic investigations. Massively parallel sequencing (MPS) technologies offer improvements to the quantitative analysis of the mitochondrial genome, specifically the interpretation of mixed mitochondrial samples. Two-person mixtures with nuclear DNA ratios of 1:1, 5:1, 10:1, and 20:1 of individuals from different and similar phylogenetic backgrounds and three-person mixtures with nuclear DNA ratios of 1:1:1 and 5:1:1 were prepared using the Precision ID mtDNA Whole Genome Panel and Ion Chef, and sequenced on the Ion PGM or Ion S5 sequencer (Thermo Fisher Scientific, Waltham, MA, USA). These data were used to evaluate whether and to what degree MPS mixtures could be deconvolved. Analysis was effective in identifying the major contributor in each instance, while SNPs from the minor contributor’s haplotype only were identified in the 1:1, 5:1, and 10:1 two-person mixtures. While the major contributor was identified from the 5:1:1 mixture, analysis of the three-person mixtures was more complex, and the mixed haplotypes could not be completely parsed. These results indicate that mixed mitochondrial DNA samples may be interpreted with the use of MPS technologies.

Original languageEnglish
Pages (from-to)1263-1272
Number of pages10
JournalInternational Journal of Legal Medicine
Volume132
Issue number5
DOIs
StatePublished - 1 Sep 2018

Fingerprint

High-Throughput Nucleotide Sequencing
Mitochondrial DNA
Mitochondrial Genome
Ions
Haplotypes
Technology
DNA
Single Nucleotide Polymorphism
Genome

Keywords

  • Ion PGM
  • Ion S5
  • Massively parallel sequencing
  • Mitochondrial DNA
  • Mixtures

Cite this

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abstract = "The mitochondrial genome has a number of characteristics that provide useful information to forensic investigations. Massively parallel sequencing (MPS) technologies offer improvements to the quantitative analysis of the mitochondrial genome, specifically the interpretation of mixed mitochondrial samples. Two-person mixtures with nuclear DNA ratios of 1:1, 5:1, 10:1, and 20:1 of individuals from different and similar phylogenetic backgrounds and three-person mixtures with nuclear DNA ratios of 1:1:1 and 5:1:1 were prepared using the Precision ID mtDNA Whole Genome Panel and Ion Chef, and sequenced on the Ion PGM or Ion S5 sequencer (Thermo Fisher Scientific, Waltham, MA, USA). These data were used to evaluate whether and to what degree MPS mixtures could be deconvolved. Analysis was effective in identifying the major contributor in each instance, while SNPs from the minor contributor’s haplotype only were identified in the 1:1, 5:1, and 10:1 two-person mixtures. While the major contributor was identified from the 5:1:1 mixture, analysis of the three-person mixtures was more complex, and the mixed haplotypes could not be completely parsed. These results indicate that mixed mitochondrial DNA samples may be interpreted with the use of MPS technologies.",
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Massively parallel sequencing-enabled mixture analysis of mitochondrial DNA samples. / Cihlar, Jennifer Churchill; Stoljarova, Monika; King, Jonathan L.; Budowle, Bruce.

In: International Journal of Legal Medicine, Vol. 132, No. 5, 01.09.2018, p. 1263-1272.

Research output: Contribution to journalArticle

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