Distribution of HIV-1 resistance-conferring polymorphic alleles SDF-1-3′A, CCR2-64I and CCR5-Δ32 in diverse populations of Andhra Pradesh, South India

G. V. Ramana, A. Vasanthi, M. Khaja, B. Su, V. Govindaiah, L. Jin, L. Singh, R. Chakraborty

Research output: Contribution to journalArticle

30 Scopus citations

Abstract

Polymorphic allelic variants of chemokine receptors CCR2 and CCR5, as well as of stromal-derived factor-1 SDF-1, the ligand for the chemokine receptor CXCR4, are known to have protective effects against HIV-1 infection and to be involved with delay in disease progression. We have studied the DNA polymorphisms at the loci that encode these proteins in 525 healthy individuals without any history of HIV-1 infection from 11 diverse populations of Andhra Pradesh, South India. The two protective alleles SDF-1-3′A and CCR2-64I at the SDF-1 and CCR2 loci, respectively, are present in all populations studied, although their frequencies differ considerably across populations (from 17% to 35% for the SDF-1-3′A allele, and from 3% to 17% for CCR2-64I). In contrast the CCR5-Δ32 allele is observed only in three populations (Yamani, Pathan and Kamma), all in low frequencies (i.e. 1% to 3%). The mean number of mutant alleles (for the three loci together) carried by each individual varies from 0.475 (in Vizag Brahmins) to 0.959 (in Bohra Muslims). The estimated relative hazard values for the populations, computed from the three-locus genotype data, are comparable to those from Africa and Southeast Asia, where AIDS is known to be widespread.

Original languageEnglish
Pages (from-to)137-140
Number of pages4
JournalJournal of Genetics
Volume80
Issue number3
DOIs
StatePublished - Dec 2001

Keywords

  • AIDS
  • Andhra Pradesh
  • Chemokine receptor
  • HIV-1 resistance polymorphism
  • Stromal-derived factor-1

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