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  • Rafal Fudala
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2020

Photophysical properties of 2-Phenylindole in poly (vinyl alcohol) film at room temperature. Enhanced phosphorescence anisotropy with direct triplet state excitation

Gryczynski, Z., Kimball, J., Fudala, R., Chavez, J., Ceresa, L., Szabelski, M., Borejdo, J. & Gryczynski, I., 1 Jan 2020, In : Methods and Applications in Fluorescence. 8, 1, 014008.

Research output: Contribution to journal › Article

2019

Correction: Systemically administered peptain-1 inhibits retinal ganglion cell death in animal models: implications for neuroprotection in glaucoma (Cell Death Discovery, (2019), 5, 1, (112), 10.1038/s41420-019-0194-2)

Stankowska, D. L., Nam, M. H., Nahomi, R. B., Chaphalkar, R. M., Nandi, S. K., Fudala, R., Krishnamoorthy, R. & Nagaraj, R. H., 1 Dec 2019, In : Cell Death Discovery. 5, 1, 122.

Research output: Contribution to journal › Comment/debate

Open Access

Spectroscopic method for estimation of MMP-9 enzyme concentration and activity

Synak, A., Serdiuk, I. E., Grobelna, B., Fudala, R., Gryczynski, I. & Bojarski, P., 15 Jul 2019, In : Journal of Molecular Liquids. 286, 110936.

Research output: Contribution to journal › Article

2018

AMCA to TAMRA long range resonance energy transfer on a flexible peptide

Synak, A., Fudala, R., Gryczynski, I., Kułak, L., Shah, S., Serdiuk, I. E., Grobelna, B., Arłukowicz, P., Kubicki, A. & Bojarski, P., Nov 2018, In : Dyes and Pigments. 158, p. 60-64 5 p.

Research output: Contribution to journal › Article

2 Scopus citations

Differences in the spatial distribution of actin in the left and right ventricles of functioning rabbit hearts

Nagwekar, J., Duggal, D., Rich, R., Fudala, R., Gryczynski, I., Raut, S., Gryczynski, Z. & Borejdo, J., Mar 2018, In : Medical Photonics. 27, p. 1-8 8 p.

Research output: Contribution to journal › Article

1 Scopus citations

Enhanced emission of Nile Red on plasmonic platforms

Synak, A., Bojarski, P., Grobelna, B., Gryczyński, I., Fudala, R. & Mońka, M., Apr 2018, In : Optical Materials. 78, p. 82-87 6 p.

Research output: Contribution to journal › Article

3 Scopus citations

Surface plasmon-assisted microscope

Borejdo, J., Gryczynski, Z., Fudala, R., Joshi, C. R., Borgmann, K., Ghorpade, A. & Gryczynski, I., 1 Jun 2018, In : Journal of Biomedical Optics. 23, 6, 060502.

Research output: Contribution to journal › Article

2 Scopus citations
2017

Fluorescence properties of doxorubicin in PBS buffer and PVA films

Shah, S., Chandra, A., Kaur, A., Sabnis, N., Lacko, A., Gryczynski, Z., Fudala, R. & Gryczynski, I., 1 May 2017, In : Journal of Photochemistry and Photobiology B: Biology. 170, p. 65-69 5 p.

Research output: Contribution to journal › Article

14 Scopus citations

Imaging viscosity of intragranular mucin matrix in cystic fibrosis cells

Requena, S., Ponomarchuk, O., Castillo, M., Rebik, J., Brochiero, E., Borejdo, J., Gryczynski, I., Dzyuba, S. V., Gryczynski, Z., Grygorczyk, R. & Fudala, R., 1 Dec 2017, In : Scientific Reports. 7, 1, 16761.

Research output: Contribution to journal › Article

2 Scopus citations

No difference in myosin kinetics and spatial distribution of the lever arm in the left and right ventricles of human hearts

Duggal, D., Requena, S., Nagwekar, J., Raut, S., Rich, R., Das, H., Patel, V., Gryczynski, I., Fudala, R., Gryczynski, Z., Blair, C., Campbell, K. S. & Borejdo, J., 13 Oct 2017, In : Frontiers in Physiology. 8, OCT, 732.

Research output: Contribution to journal › Article

2016

A triazine-based BODIPY trimer as a molecular viscometer

Raut, S. L., Kimball, J. D., Fudala, R., Bora, I., Chib, R., Jaafari, H., Castillo, M. K., Smith, N. W., Gryczynski, I., Dzyuba, S. V. & Gryczynski, Z., 1 Jan 2016, In : Physical Chemistry Chemical Physics. 18, 6, p. 4535-4540 6 p.

Research output: Contribution to journal › Article

16 Scopus citations

Demonstration of FRET in solutions

Shah, S., Gryczynski, Z., Chib, R., Fudala, R., Baxi, A., Borejdo, J., Synak, A. & Gryczynski, I., Mar 2016, In : Methods and Applications in Fluorescence. 4, 1, 015001.

Research output: Contribution to journal › Article

2 Scopus citations

Fluorescence lifetime imaging with time-gated detection of hyaluronidase using a long lifetime azadioxatriangulenium (ADOTA) fluorophore

Chib, R., Requena, S., Mummert, M., Strzhemechny, Y. M., Gryczynski, I., Borejdo, J., Gryczynski, Z. & Fudala, R., 17 Nov 2016, In : Methods and Applications in Fluorescence. 4, 4, 1 p.

Research output: Contribution to journal › Article

4 Scopus citations

Fluorescent biosensor for the detection of hyaluronidase: intensity-based ratiometric sensing and fluorescence lifetime-based sensing using a long lifetime azadioxatriangulenium (ADOTA) fluorophore

Chib, R., Mummert, M., Bora, I., Laursen, B. W., Shah, S., Pendry, R., Gryczynski, I., Borejdo, J., Gryczynski, Z. & Fudala, R., 1 May 2016, In : Analytical and bioanalytical chemistry. 408, 14, p. 3811-3821 11 p.

Research output: Contribution to journal › Article

6 Scopus citations

FRET study in oligopeptide-linked donor-acceptor system in PVA matrix

Shah, S., Mandecki, W., Li, J., Gryczynski, Z., Borejdo, J., Gryczynski, I. & Fudala, R., 13 Dec 2016, In : Methods and Applications in Fluorescence. 4, 4, 1 p.

Research output: Contribution to journal › Article

Multi-pulse pumping for far-field super-resolution imaging

Requena, S., Raut, S., Doan, H., Kimball, J., Fudala, R., Borejdo, J., Gryczynski, I., Strzhemechny, Y. & Gryczynski, Z., 1 Jan 2016, Single Molecule Spectroscopy and Superresolution Imaging IX. Enderlein, J., Gregor, I., Gryczynski, Z. K., Erdmann, R. & Koberling, F. (eds.). SPIE, 97140F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9714).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2015

A Novel Method of Determining the Functional Effects of a Minor Genetic Modification of a Protein

Nagwekar, J., Duggal, D., Midde, K., Rich, R., Liang, J., Kazmierczak, K., Huang, W., Fudala, R., Gryczynski, I., Gryczynski, Z., Szczesna-Cordary, D. & Borejdo, J., 18 Nov 2015, In : Frontiers in Cardiovascular Medicine. 2, 35.

Research output: Contribution to journal › Article

Open Access
1 Scopus citations

Effect of a myosin regulatory light chain mutation K104E on actin-myosin interactions

Duggal, D., Nagwekar, J., Rich, R., Huang, W., Midde, K., Fudala, R., Das, H., Gryczynski, I., Szczesna-Cordary, D. & Borejdo, J., 15 May 2015, In : American Journal of Physiology - Heart and Circulatory Physiology. 308, 10, p. H1248-H1257

Research output: Contribution to journal › Article

4 Scopus citations

Standard reference for instrument response function in fluorescence lifetime measurements in visible and near infrared

Chib, R., Shah, S., Gryczynski, Z., Fudala, R., Borejdo, J., Zelent, B., Corradini, M. G., Ludescher, R. D. & Gryczynski, I., 29 Dec 2015, In : Measurement Science and Technology. 27, 2, 027001.

Research output: Contribution to journal › Article

2 Scopus citations
2014

A homodimeric BODIPY rotor as a fluorescent viscosity sensor for membrane-mimicking and cellular environments

Raut, S., Kimball, J., Fudala, R., Doan, H., Maliwal, B., Sabnis, N., Lacko, A., Gryczynski, I., Dzyuba, S. V. & Gryczynski, Z., 19 Nov 2014, In : Physical Chemistry Chemical Physics. 16, 48, p. 27037-27042 6 p.

Research output: Contribution to journal › Article

40 Scopus citations

BSA AU clusters as a probe for enhanced fluorescence detection using multipulse excitation scheme

Raut, S. L., Rich, R., Fudala, R., Kokate, R., Kimball, J. D., Borejdo, J., Vishwanatha, J. K., Gryczynski, Z. & Gryczynski, I., 1 Jan 2014, In : Current Pharmaceutical Biotechnology. 14, 13, p. 1139-1144 6 p.

Research output: Contribution to journal › Article

1 Scopus citations

Fluorescence detection of MMP-9. II. ratiometric FRET-based sensing with dually labeled specific peptide

Fudala, R., Rich, R., Mukerjee, A., Ranjan, A. P., Vishwanatha, J. K., Kurdowska, A. K., Gryczynski, Z., Borejdo, J. & Gryczynski, I., 1 Jan 2014, In : Current Pharmaceutical Biotechnology. 14, 13, p. 1134-1138 5 p.

Research output: Contribution to journal › Article

11 Scopus citations

Fluorescent nanodiamonds for ultrasensitive detection

Kimball, J., Shumilov, D., Maliwa, B., Zerda, T. W., Rout, B., Fudala, R., Raut, S. L., Gryczynski, I., Simanek, E., Borejdo, J., Rich, R., Akopova, I. & Gryczynski, Z., 1 Jan 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89501H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

FRET enhanced fluorescent nanodiamonds

Fudala, R., Raut, S., Maliwal, B. P., Zerda, T. W., Gryczynski, I., Simanek, E., Borejdo, J., Rich, R., Akopova, I. & Gryczynski, Z., 1 Jan 2014, In : Current Pharmaceutical Biotechnology. 14, 13, p. 1127-1133 7 p.

Research output: Contribution to journal › Article

12 Scopus citations

Long lived BSA Au clusters as a time gated intensity imaging probe

Raut, S. L., Fudala, R., Rich, R., Kokate, R. A., Chib, R., Gryczynski, Z. & Gryczynski, I., 7 Mar 2014, In : Nanoscale. 6, 5, p. 2594-2597 4 p.

Research output: Contribution to journal › Article

23 Scopus citations

Multiple-pulse pumping for enhanced fluorescence detection and molecular imaging in tissue

Rich, R. M., Gryczynski, I., Fudala, R., Borejdo, J., Stankowska, D. L., Krishnamoorthy, R. R., Raut, S., Maliwal, B. P., Shumilov, D., Doan, H. & Gryczynski, Z., 15 Mar 2014, In : Methods. 66, 2, p. 292-298 7 p.

Research output: Contribution to journal › Article

10 Scopus citations

Phosphorylation of myosin regulatory light chain has minimal effect on kinetics and distribution of orientations of cross bridges of rabbit skeletal muscle

Duggal, D., Nagwekar, J., Rich, R., Midde, K., Fudala, R., Gryczynski, I. & Borejdo, J., 15 Feb 2014, In : American Journal of Physiology - Regulatory Integrative and Comparative Physiology. 306, 4, p. R222-R233

Research output: Contribution to journal › Article

4 Scopus citations

Preparation of plasmonic platforms of silver wires on gold mirrors and their application to surface enhanced fluorescence

Shtoyko, T., Raut, S., Rich, R. M., Sronce, R. J., Fudala, R., Mason, R. N., Akopova, I., Gryczynski, Z. & Gryczynski, I., 12 Nov 2014, In : ACS Applied Materials and Interfaces. 6, 21, p. 18780-18787 8 p.

Research output: Contribution to journal › Article

7 Scopus citations

Real-time imaging of exocytotic mucin release and swelling in Calu-3 cells using acridine orange

Shumilov, D., Popov, A., Fudala, R., Akopova, I., Gryczynski, I., Borejdo, J., Gryczynski, Z. & Grygorczyk, R., 15 Mar 2014, In : Methods. 66, 2, p. 312-324 13 p.

Research output: Contribution to journal › Article

7 Scopus citations

Resonance energy transfer between fluorescent BSA protected Au nanoclusters and organic fluorophores

Raut, S., Rich, R., Fudala, R., Butler, S., Kokate, R., Gryczynski, Z., Luchowski, R. & Gryczynski, I., 7 Jan 2014, In : Nanoscale. 6, 1, p. 385-391 7 p.

Research output: Contribution to journal › Article

42 Scopus citations

Simple multipulse excitation for enhanced detection of long-lived fluorophores

Kimball, J., Shumilov, D., Fudala, R., Raut, S. L., Gryczynski, I., Borejdo, J., Akopova, I., Grygorczyk, R. & Gryczynski, Z., 1 Jan 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, Vol. 8950. 895005

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

The spatial distribution of actin and mechanical cycle of myosin are different in right and left ventricles of healthy mouse hearts

Nagwekar, J., Duggal, D., Rich, R., Raut, S., Fudala, R., Gryczynski, I., Gryczynski, Z. & Borejdo, J., 9 Dec 2014, In : Biochemistry. 53, 48, p. 7641-7649 9 p.

Research output: Contribution to journal › Article

1 Scopus citations
2013

Bruton's tyrosine kinase mediates FcγRIIa/Toll-like receptor-4 receptor crosstalk in human neutrophils

Krupa, A., Fudala, R., Florence, J. M., Tucker, T., Allen, T. C., Standiford, T. J., Luchowski, R., Fol, M., Rahman, M., Gryczynski, Z., Gryczynski, I. & Kurdowska, A. K., 1 Feb 2013, In : American journal of respiratory cell and molecular biology. 48, 2, p. 240-249 10 p.

Research output: Contribution to journal › Article

17 Scopus citations

Detection of hyaluronidase activity using fluorescence lifetime correlation spectroscopy to separate diffusing species and eliminate autofluorescence

Rich, R. M., Mummert, M., Gryczynski, Z., Borejdo, J., Gryczynski, I., Sørensen, T. J., Laursen, B. W. & Fudala, R., 28 May 2013, Single Molecule Spectroscopy and Superresolution Imaging VI. 859003. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8590).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Scopus citations

Elimination of autofluorescence background from fluorescence tissue images by use of time-gated detection and the AzaDiOxaTriAngulenium (ADOTA) fluorophore

Rich, R. M., Stankowska, D. L., Maliwal, B. P., Sørensen, T. J., Laursen, B. W., Krishnamoorthy, R., Gryczynski, Z., Borejdo, J., Gryczynski, I. & Fudala, R., 1 Jan 2013, In : Analytical and Bioanalytical Chemistry. 405, 6, p. 2065-2075 11 p.

Research output: Contribution to journal › Article

42 Scopus citations

Elimination of autofluorescence in fluorescence correlation spectroscopy using the AzaDiOxaTriAngulenium (ADOTA) fluorophore in combination with time-correlated single-photon counting (TCSPC)

Rich, R. M., Mummert, M., Gryczynski, Z., Borejdo, J., Sorensen, T. J., Laursen, B., Foldes-Papp, Z., Gryczynski, I. & Fudala, R., 8 Apr 2013, In : Analytical and bioanalytical chemistry. 405, 14, p. 4887-4894 8 p.

Research output: Contribution to journal › Article

20 Scopus citations

FRET based ratio-metric sensing of hyaluronidase in synthetic urine as a biomarker for bladder and prostate cancer

Chib, R., Raut, S. L., Fudala, R., Chang, A., Mummert, M., Rich, R., Gryczynski, Z. & Gryczynski, I., 14 Jun 2013, In : Current Pharmaceutical Biotechnology. 14, 4, p. 470-474 5 p.

Research output: Contribution to journal › Article

15 Scopus citations

Lenticular mitoprotection. Part A: Monitoring mitochondrial depolarization with JC-1 and artifactual fluorescence by the glycogen synthase kinase-3β inhibitor, SB216763

Brooks, M. M., Neelam, S., Fudala, R., Gryczynski, I. & Cammarata, P. R., 27 Jun 2013, In : Molecular vision. 19, p. 1406-1412 7 p.

Research output: Contribution to journal › Article

35 Scopus citations

Long-Lived Bright Red Emitting Azaoxa-Triangulenium Fluorophores

Maliwal, B. P., Fudala, R., Raut, S., Kokate, R., Sørensen, T. J., Laursen, B. W., Gryczynski, Z. & Gryczynski, I., 7 May 2013, In : PLoS ONE. 8, 5, e63043.

Research output: Contribution to journal › Article

34 Scopus citations

Rotation of myosin lever arms during isometric contraction of skeletal myofibrils

Midde, K., Rich, R., Hohreiter, V., Raut, S., Luchowski, R., Hinze, C., Fudala, R., Gryczynski, I., Gryczynski, Z. & Borejdo, J., 1 Feb 2013, Skeletal Muscle: Physiology, Classification and Disease. Nova Science Publishers, Inc., p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Time-resolved and temperature-dependent photoluminescence of ternary and quaternary nanocrystals of CuInS2 with ZnS capping and cation exchange

Seo, J., Raut, S. L., Abdel-Fattah, M., Rice, Q., Tabibi, B., Rich, R., Fudala, R., Gryczynski, I., Gryczynski, Z., Kim, W. J., Jung, S. & Hyun, R., 7 Sep 2013, In : Journal of Applied Physics. 114, 9, 094310.

Research output: Contribution to journal › Article

25 Scopus citations
2012

Detection of hyaluronidase activity using fluorescein labeled hyaluronic acid and Fluorescence Correlation Spectroscopy

Rich, R. M., Mummert, M., Foldes-Papp, Z., Gryczynski, Z., Borejdo, J., Gryczynski, I. & Fudala, R., 5 Nov 2012, In : Journal of Photochemistry and Photobiology B: Biology. 116, p. 7-12 6 p.

Research output: Contribution to journal › Article

11 Scopus citations

Extending Förster resonance energy transfer measurements beyond 100 Å using common organic fluorophores: Enhanced transfer in the presence of multiple acceptors

Maliwal, B. P., Raut, S., Fudala, R., D'Auria, S., Marzullo, V. M., Luini, A., Gryczynski, I. & Gryczynski, Z., 1 Jan 2012, In : Journal of Biomedical Optics. 17, 1, 011006.

Research output: Contribution to journal › Article

14 Scopus citations

Fluorescent protein-labeled glucocorticoid receptor alpha isoform trafficking in cultured human trabecular meshwork cells.

Dibas, A., Jiang, M., Fudala, R., Gryczynski, I., Gryczynski, Z., Clark, A. & Yorio, T., 1 Jan 2012, In : Investigative ophthalmology & visual science. 53, 6, p. 2938-2950 13 p.

Research output: Contribution to journal › Article

4 Scopus citations

Hybrid optical materials of plasmon-coupled CdSe/ZnS coreshells for photonic applications

Seo, J., Fudala, R., Kim, W. J., Rich, R., Tabibi, B., Cho, H., Gryczynski, Z., Gryczynski, I. & Yu, W., 1 Aug 2012, In : Optical Materials Express. 2, 8, p. 1026-1039 14 p.

Research output: Contribution to journal › Article

10 Scopus citations

Lifetime-based sensing of the hyaluronidase using fluorescein labeled hyaluronic acid

Fudala, R., Mummert, M. E., Gryczynski, Z., Rich, R., Borejdo, J. & Gryczynski, I., 5 Jan 2012, In : Journal of Photochemistry and Photobiology B: Biology. 106, 1, p. 69-73 5 p.

Research output: Contribution to journal › Article

10 Scopus citations

Metal enhanced fluorescence of Me-ADOTA·Cl dye by silver triangular nanoprisms on a gold film

Folmar, M., Shtoyko, T., Fudala, R., Akopova, I., Gryczynski, Z., Raut, S. & Gryczynski, I., 2 Apr 2012, In : Chemical Physics Letters. 531, p. 126-131 6 p.

Research output: Contribution to journal › Article

11 Scopus citations

Novel aspects of urokinase function in the injured lung: Role of α2-macroglobulin

Komissarov, A. A., Stankowska, D., Krupa, A., Fudala, R., Florova, G., Florence, J., Fol, M., Allen, T. C., Idell, S., Matthay, M. A. & Kurdowska, A. K., 15 Dec 2012, In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 303, 12, p. L1037-L1045

Research output: Contribution to journal › Article

9 Scopus citations

Properties of coatings on RFID p-Chips that support plasmonic fluorescence enhancement in bioassays

Rich, R., Li, J., Fudala, R., Gryczynski, Z., Gryczynski, I. & Mandecki, W., 1 Nov 2012, In : Analytical and bioanalytical chemistry. 404, 8, p. 2223-2231 9 p.

Research output: Contribution to journal › Article

6 Scopus citations

The presence of anti-LPS antibodies and human serum activity against Proteus mirabilis S/R forms in correlation with TLR4 (Thr399Ile) gene polymorphism in rheumatoid arthritis

Arabski, M., Fudala, R., Koza, A., Wasik, S., Futoma-Koloch, B., Bugla-Ploskonska, G. & Kaca, W., 1 Nov 2012, In : Clinical Biochemistry. 45, 16-17, p. 1374-1382 9 p.

Research output: Contribution to journal › Article

10 Scopus citations