Find Research Outputs

Search in all content

Filters for Publications

Search concepts
Selected Filters

Publication Year

  • 2019
  • 2018
  • 2017
  • 2016
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011

Author

  • Rafal Fudala
2019
Open Access

Spectroscopic method for estimation of MMP-9 enzyme concentration and activity

Synak, A., Serdiuk, I. E., Grobelna, B., Fudala, R., Gryczynski, I. & Bojarski, P., 15 Jul 2019, In : Journal of Molecular Liquids. 286, 110936.

Research output: Contribution to journalArticle

2018

AMCA to TAMRA long range resonance energy transfer on a flexible peptide

Synak, A., Fudala, R., Gryczynski, I., Kułak, L., Shah, S., Serdiuk, I. E., Grobelna, B., Arłukowicz, P., Kubicki, A. & Bojarski, P., Nov 2018, In : Dyes and Pigments. 158, p. 60-64 5 p.

Research output: Contribution to journalArticle

2 Scopus citations

Differences in the spatial distribution of actin in the left and right ventricles of functioning rabbit hearts

Nagwekar, J., Duggal, D., Rich, R., Fudala, R., Gryczynski, I., Raut, S., Gryczynski, Z. & Borejdo, J., Mar 2018, In : Medical Photonics. 27, p. 1-8 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Enhanced emission of Nile Red on plasmonic platforms

Synak, A., Bojarski, P., Grobelna, B., Gryczyński, I., Fudala, R. & Mońka, M., Apr 2018, In : Optical Materials. 78, p. 82-87 6 p.

Research output: Contribution to journalArticle

3 Scopus citations

Surface plasmon-assisted microscope

Borejdo, J., Gryczynski, Z., Fudala, R., Joshi, C. R., Borgmann, K., Ghorpade, A. & Gryczynski, I., 1 Jun 2018, In : Journal of Biomedical Optics. 23, 6, 060502.

Research output: Contribution to journalArticle

2 Scopus citations
2017

Fluorescence properties of doxorubicin in PBS buffer and PVA films

Shah, S., Chandra, A., Kaur, A., Sabnis, N., Lacko, A., Gryczynski, Z., Fudala, R. & Gryczynski, I., 1 May 2017, In : Journal of Photochemistry and Photobiology B: Biology. 170, p. 65-69 5 p.

Research output: Contribution to journalArticle

14 Scopus citations

Imaging viscosity of intragranular mucin matrix in cystic fibrosis cells

Requena, S., Ponomarchuk, O., Castillo, M., Rebik, J., Brochiero, E., Borejdo, J., Gryczynski, I., Dzyuba, S. V., Gryczynski, Z., Grygorczyk, R. & Fudala, R., 1 Dec 2017, In : Scientific Reports. 7, 1, 16761.

Research output: Contribution to journalArticle

2 Scopus citations

No difference in myosin kinetics and spatial distribution of the lever arm in the left and right ventricles of human hearts

Duggal, D., Requena, S., Nagwekar, J., Raut, S., Rich, R., Das, H., Patel, V., Gryczynski, I., Fudala, R., Gryczynski, Z., Blair, C., Campbell, K. S. & Borejdo, J., 13 Oct 2017, In : Frontiers in Physiology. 8, OCT, 732.

Research output: Contribution to journalArticle

2016

A triazine-based BODIPY trimer as a molecular viscometer

Raut, S. L., Kimball, J. D., Fudala, R., Bora, I., Chib, R., Jaafari, H., Castillo, M. K., Smith, N. W., Gryczynski, I., Dzyuba, S. V. & Gryczynski, Z., 1 Jan 2016, In : Physical Chemistry Chemical Physics. 18, 6, p. 4535-4540 6 p.

Research output: Contribution to journalArticle

16 Scopus citations

Demonstration of FRET in solutions

Shah, S., Gryczynski, Z., Chib, R., Fudala, R., Baxi, A., Borejdo, J., Synak, A. & Gryczynski, I., Mar 2016, In : Methods and Applications in Fluorescence. 4, 1, 015001.

Research output: Contribution to journalArticle

2 Scopus citations
4 Scopus citations
6 Scopus citations

FRET study in oligopeptide-linked donor-acceptor system in PVA matrix

Shah, S., Mandecki, W., Li, J., Gryczynski, Z., Borejdo, J., Gryczynski, I. & Fudala, R., 13 Dec 2016, In : Methods and Applications in Fluorescence. 4, 4, 1 p.

Research output: Contribution to journalArticle

Multi-pulse pumping for far-field super-resolution imaging

Requena, S., Raut, S., Doan, H., Kimball, J., Fudala, R., Borejdo, J., Gryczynski, I., Strzhemechny, Y. & Gryczynski, Z., 1 Jan 2016, Single Molecule Spectroscopy and Superresolution Imaging IX. Enderlein, J., Gregor, I., Gryczynski, Z. K., Erdmann, R. & Koberling, F. (eds.). SPIE, 97140F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9714).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

A Novel Method of Determining the Functional Effects of a Minor Genetic Modification of a Protein

Nagwekar, J., Duggal, D., Midde, K., Rich, R., Liang, J., Kazmierczak, K., Huang, W., Fudala, R., Gryczynski, I., Gryczynski, Z., Szczesna-Cordary, D. & Borejdo, J., 18 Nov 2015, In : Frontiers in Cardiovascular Medicine. 2, 35.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Effect of a myosin regulatory light chain mutation K104E on actin-myosin interactions

Duggal, D., Nagwekar, J., Rich, R., Huang, W., Midde, K., Fudala, R., Das, H., Gryczynski, I., Szczesna-Cordary, D. & Borejdo, J., 15 May 2015, In : American Journal of Physiology - Heart and Circulatory Physiology. 308, 10, p. H1248-H1257

Research output: Contribution to journalArticle

4 Scopus citations

Standard reference for instrument response function in fluorescence lifetime measurements in visible and near infrared

Chib, R., Shah, S., Gryczynski, Z., Fudala, R., Borejdo, J., Zelent, B., Corradini, M. G., Ludescher, R. D. & Gryczynski, I., 29 Dec 2015, In : Measurement Science and Technology. 27, 2, 027001.

Research output: Contribution to journalArticle

2 Scopus citations
2014

A homodimeric BODIPY rotor as a fluorescent viscosity sensor for membrane-mimicking and cellular environments

Raut, S., Kimball, J., Fudala, R., Doan, H., Maliwal, B., Sabnis, N., Lacko, A., Gryczynski, I., Dzyuba, S. V. & Gryczynski, Z., 19 Nov 2014, In : Physical Chemistry Chemical Physics. 16, 48, p. 27037-27042 6 p.

Research output: Contribution to journalArticle

41 Scopus citations

BSA AU clusters as a probe for enhanced fluorescence detection using multipulse excitation scheme

Raut, S. L., Rich, R., Fudala, R., Kokate, R., Kimball, J. D., Borejdo, J., Vishwanatha, J. K., Gryczynski, Z. & Gryczynski, I., 1 Jan 2014, In : Current Pharmaceutical Biotechnology. 14, 13, p. 1139-1144 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Fluorescence detection of MMP-9. II. ratiometric FRET-based sensing with dually labeled specific peptide

Fudala, R., Rich, R., Mukerjee, A., Ranjan, A. P., Vishwanatha, J. K., Kurdowska, A. K., Gryczynski, Z., Borejdo, J. & Gryczynski, I., 1 Jan 2014, In : Current Pharmaceutical Biotechnology. 14, 13, p. 1134-1138 5 p.

Research output: Contribution to journalArticle

11 Scopus citations

Fluorescent nanodiamonds for ultrasensitive detection

Kimball, J., Shumilov, D., Maliwa, B., Zerda, T. W., Rout, B., Fudala, R., Raut, S. L., Gryczynski, I., Simanek, E., Borejdo, J., Rich, R., Akopova, I. & Gryczynski, Z., 1 Jan 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89501H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

FRET enhanced fluorescent nanodiamonds

Fudala, R., Raut, S., Maliwal, B. P., Zerda, T. W., Gryczynski, I., Simanek, E., Borejdo, J., Rich, R., Akopova, I. & Gryczynski, Z., 1 Jan 2014, In : Current Pharmaceutical Biotechnology. 14, 13, p. 1127-1133 7 p.

Research output: Contribution to journalArticle

12 Scopus citations

Long lived BSA Au clusters as a time gated intensity imaging probe

Raut, S. L., Fudala, R., Rich, R., Kokate, R. A., Chib, R., Gryczynski, Z. & Gryczynski, I., 7 Mar 2014, In : Nanoscale. 6, 5, p. 2594-2597 4 p.

Research output: Contribution to journalArticle

24 Scopus citations

Multiple-pulse pumping for enhanced fluorescence detection and molecular imaging in tissue

Rich, R. M., Gryczynski, I., Fudala, R., Borejdo, J., Stankowska, D. L., Krishnamoorthy, R. R., Raut, S., Maliwal, B. P., Shumilov, D., Doan, H. & Gryczynski, Z., 15 Mar 2014, In : Methods. 66, 2, p. 292-298 7 p.

Research output: Contribution to journalArticle

10 Scopus citations
4 Scopus citations

Preparation of plasmonic platforms of silver wires on gold mirrors and their application to surface enhanced fluorescence

Shtoyko, T., Raut, S., Rich, R. M., Sronce, R. J., Fudala, R., Mason, R. N., Akopova, I., Gryczynski, Z. & Gryczynski, I., 12 Nov 2014, In : ACS Applied Materials and Interfaces. 6, 21, p. 18780-18787 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

Real-time imaging of exocytotic mucin release and swelling in Calu-3 cells using acridine orange

Shumilov, D., Popov, A., Fudala, R., Akopova, I., Gryczynski, I., Borejdo, J., Gryczynski, Z. & Grygorczyk, R., 15 Mar 2014, In : Methods. 66, 2, p. 312-324 13 p.

Research output: Contribution to journalArticle

7 Scopus citations

Resonance energy transfer between fluorescent BSA protected Au nanoclusters and organic fluorophores

Raut, S., Rich, R., Fudala, R., Butler, S., Kokate, R., Gryczynski, Z., Luchowski, R. & Gryczynski, I., 7 Jan 2014, In : Nanoscale. 6, 1, p. 385-391 7 p.

Research output: Contribution to journalArticle

42 Scopus citations

Simple multipulse excitation for enhanced detection of long-lived fluorophores

Kimball, J., Shumilov, D., Fudala, R., Raut, S. L., Gryczynski, I., Borejdo, J., Akopova, I., Grygorczyk, R. & Gryczynski, Z., 1 Jan 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, Vol. 8950. 895005

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The spatial distribution of actin and mechanical cycle of myosin are different in right and left ventricles of healthy mouse hearts

Nagwekar, J., Duggal, D., Rich, R., Raut, S., Fudala, R., Gryczynski, I., Gryczynski, Z. & Borejdo, J., 9 Dec 2014, In : Biochemistry. 53, 48, p. 7641-7649 9 p.

Research output: Contribution to journalArticle

1 Scopus citations
2013

Bruton's tyrosine kinase mediates FcγRIIa/Toll-like receptor-4 receptor crosstalk in human neutrophils

Krupa, A., Fudala, R., Florence, J. M., Tucker, T., Allen, T. C., Standiford, T. J., Luchowski, R., Fol, M., Rahman, M., Gryczynski, Z., Gryczynski, I. & Kurdowska, A. K., 1 Feb 2013, In : American journal of respiratory cell and molecular biology. 48, 2, p. 240-249 10 p.

Research output: Contribution to journalArticle

17 Scopus citations

Detection of hyaluronidase activity using fluorescence lifetime correlation spectroscopy to separate diffusing species and eliminate autofluorescence

Rich, R. M., Mummert, M., Gryczynski, Z., Borejdo, J., Gryczynski, I., Sørensen, T. J., Laursen, B. W. & Fudala, R., 28 May 2013, Single Molecule Spectroscopy and Superresolution Imaging VI. 859003. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8590).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
44 Scopus citations
21 Scopus citations

FRET based ratio-metric sensing of hyaluronidase in synthetic urine as a biomarker for bladder and prostate cancer

Chib, R., Raut, S. L., Fudala, R., Chang, A., Mummert, M., Rich, R., Gryczynski, Z. & Gryczynski, I., 14 Jun 2013, In : Current Pharmaceutical Biotechnology. 14, 4, p. 470-474 5 p.

Research output: Contribution to journalArticle

15 Scopus citations

Lenticular mitoprotection. Part A: Monitoring mitochondrial depolarization with JC-1 and artifactual fluorescence by the glycogen synthase kinase-3β inhibitor, SB216763

Brooks, M. M., Neelam, S., Fudala, R., Gryczynski, I. & Cammarata, P. R., 27 Jun 2013, In : Molecular vision. 19, p. 1406-1412 7 p.

Research output: Contribution to journalArticle

36 Scopus citations

Long-Lived Bright Red Emitting Azaoxa-Triangulenium Fluorophores

Maliwal, B. P., Fudala, R., Raut, S., Kokate, R., Sørensen, T. J., Laursen, B. W., Gryczynski, Z. & Gryczynski, I., 7 May 2013, In : PLoS ONE. 8, 5, e63043.

Research output: Contribution to journalArticle

35 Scopus citations

Rotation of myosin lever arms during isometric contraction of skeletal myofibrils

Midde, K., Rich, R., Hohreiter, V., Raut, S., Luchowski, R., Hinze, C., Fudala, R., Gryczynski, I., Gryczynski, Z. & Borejdo, J., 1 Feb 2013, Skeletal Muscle: Physiology, Classification and Disease. Nova Science Publishers, Inc., p. 1-24 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Time-resolved and temperature-dependent photoluminescence of ternary and quaternary nanocrystals of CuInS2 with ZnS capping and cation exchange

Seo, J., Raut, S. L., Abdel-Fattah, M., Rice, Q., Tabibi, B., Rich, R., Fudala, R., Gryczynski, I., Gryczynski, Z., Kim, W. J., Jung, S. & Hyun, R., 7 Sep 2013, In : Journal of Applied Physics. 114, 9, 094310.

Research output: Contribution to journalArticle

25 Scopus citations
2012
11 Scopus citations

Extending Förster resonance energy transfer measurements beyond 100 Å using common organic fluorophores: Enhanced transfer in the presence of multiple acceptors

Maliwal, B. P., Raut, S., Fudala, R., D'Auria, S., Marzullo, V. M., Luini, A., Gryczynski, I. & Gryczynski, Z., 1 Jan 2012, In : Journal of Biomedical Optics. 17, 1, 011006.

Research output: Contribution to journalArticle

14 Scopus citations
4 Scopus citations

Hybrid optical materials of plasmon-coupled CdSe/ZnS coreshells for photonic applications

Seo, J., Fudala, R., Kim, W. J., Rich, R., Tabibi, B., Cho, H., Gryczynski, Z., Gryczynski, I. & Yu, W., 1 Aug 2012, In : Optical Materials Express. 2, 8, p. 1026-1039 14 p.

Research output: Contribution to journalArticle

10 Scopus citations

Lifetime-based sensing of the hyaluronidase using fluorescein labeled hyaluronic acid

Fudala, R., Mummert, M. E., Gryczynski, Z., Rich, R., Borejdo, J. & Gryczynski, I., 5 Jan 2012, In : Journal of Photochemistry and Photobiology B: Biology. 106, 1, p. 69-73 5 p.

Research output: Contribution to journalArticle

10 Scopus citations

Metal enhanced fluorescence of Me-ADOTA·Cl dye by silver triangular nanoprisms on a gold film

Folmar, M., Shtoyko, T., Fudala, R., Akopova, I., Gryczynski, Z., Raut, S. & Gryczynski, I., 2 Apr 2012, In : Chemical Physics Letters. 531, p. 126-131 6 p.

Research output: Contribution to journalArticle

11 Scopus citations

Novel aspects of urokinase function in the injured lung: Role of α2-macroglobulin

Komissarov, A. A., Stankowska, D., Krupa, A., Fudala, R., Florova, G., Florence, J., Fol, M., Allen, T. C., Idell, S., Matthay, M. A. & Kurdowska, A. K., 15 Dec 2012, In : American Journal of Physiology - Lung Cellular and Molecular Physiology. 303, 12, p. L1037-L1045

Research output: Contribution to journalArticle

9 Scopus citations

Properties of coatings on RFID p-Chips that support plasmonic fluorescence enhancement in bioassays

Rich, R., Li, J., Fudala, R., Gryczynski, Z., Gryczynski, I. & Mandecki, W., 1 Nov 2012, In : Analytical and bioanalytical chemistry. 404, 8, p. 2223-2231 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

The presence of anti-LPS antibodies and human serum activity against Proteus mirabilis S/R forms in correlation with TLR4 (Thr399Ile) gene polymorphism in rheumatoid arthritis

Arabski, M., Fudala, R., Koza, A., Wasik, S., Futoma-Koloch, B., Bugla-Ploskonska, G. & Kaca, W., 1 Nov 2012, In : Clinical Biochemistry. 45, 16-17, p. 1374-1382 9 p.

Research output: Contribution to journalArticle

10 Scopus citations
2011

Fluorescence detection of hyaluronidase

Fudala, R., Mummert, M. E., Gryczynski, Z. & Gryczynski, I., 2 Sep 2011, In : Journal of Photochemistry and Photobiology B: Biology. 104, 3, p. 473-477 5 p.

Research output: Contribution to journalArticle

19 Scopus citations