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2019

A genome-wide association study of tramadol metabolism from post-mortem samples

Wendt, F. R., Rahikainen, A. L., King, J. L., Sajantila, A. & Budowle, B., 1 Jan 2019, In : Pharmacogenomics Journal.

Research output: Contribution to journalArticleResearchpeer-review

Tramadol
Genome-Wide Association Study
Polypharmacy
Phenotype
Peptides

A pathway-driven predictive model of tramadol pharmacogenetics

Wendt, F. R., Novroski, N. M. M., Rahikainen, A. L., Sajantila, A. & Budowle, B., 1 Jul 2019, In : European Journal of Human Genetics. 27, 7, p. 1143-1156 14 p.

Research output: Contribution to journalArticleResearchpeer-review

Tramadol
Pharmacogenetics
Peptides
Phenotype
Genes

Assessment of impact of DNA extraction methods on analysis of human remain samples on massively parallel sequencing success

Zeng, X., Elwick, K., Mayes, C., Takahashi, M., King, J. L., Gangitano, D., Budowle, B. & Hughes-Stamm, S., 14 Jan 2019, In : International journal of legal medicine. 133, 1, p. 51-58 8 p.

Research output: Contribution to journalArticleResearchpeer-review

High-Throughput Nucleotide Sequencing
DNA
Bone and Bones
Hair
Single Nucleotide Polymorphism

Compound stutter in D2S1338 and D12S391

Woerner, A. E., King, J. L. & Budowle, B., 1 Mar 2019, In : Forensic Science International: Genetics. 39, p. 50-56 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Linear Models
Nucleotides
High-Throughput Nucleotide Sequencing

Copan microFLOQ® Direct Swab collection of bloodstains, saliva, and semen on cotton cloth

Sherier, A. J., Kieser, R. E., Novroski, N. M. M., Wendt, F. R., King, J. L., Woerner, A. E., Ambers, A., Garofano, P. & Budowle, B., 1 Jan 2019, In : International journal of legal medicine.

Research output: Contribution to journalArticleResearchpeer-review

Semen
Saliva
Coloring Agents
Polymerase Chain Reaction
Blood Stains

Expanding beyond the current core STR loci: An exploration of 73 STR markers with increased diversity for enhanced DNA mixture deconvolution

Novroski, N. M. M., Wendt, F. R., Woerner, A. E., Bus, M. M., Coble, M. D. & Budowle, B., 1 Jan 2019, In : Forensic Science International: Genetics. 38, p. 121-129 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Microsatellite Repeats
Alleles
DNA
Forensic Genetics
Population Genetics

Exploring the 1000 Genomes Project haplotype reporting for the CYP2D6 pharmacogene

Wendt, F. R., Woerner, A. E., Sajantila, A., Moura-Neto, R. S. & Budowle, B., 1 May 2019, In : International journal of legal medicine. 133, 3, p. 807-810 4 p.

Research output: Contribution to journalLetterResearchpeer-review

Cytochrome P-450 CYP2D6
Haplotypes
Genome
1 Citation (Scopus)

Forensic human identification with targeted microbiome markers using nearest neighbor classification

Woerner, A. E., Novroski, N. M. M., Wendt, F. R., Ambers, A. D., Wiley, R., Schmedes, S. E. & Budowle, B., 1 Jan 2019, In : Forensic Science International: Genetics. 38, p. 130-139 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Forensic Anthropology
Microbiota
Forensic Genetics
Population Genetics
Phylogeny

Linkage, recombination, and mutation rate analyses of 19 X-chromosomal STR loci in Chinese Southern Han pedigrees

Yang, X., Chen, Y., Zeng, X., Chen, L., Liu, C., Liu, H., Xu, Q., Budowle, B. & Liu, C., 1 Jan 2019, In : International journal of legal medicine.

Research output: Contribution to journalArticleResearchpeer-review

Linkage Disequilibrium
Mutation Rate
Pedigree
Genetic Recombination
Haplotypes

Massively parallel sequence data of 31 autosomal STR loci from 496 Spanish individuals revealed concordance with CE-STR technology and enhanced discrimination power

The DNASEQEX Consortium, 1 Sep 2019, In : Forensic Science International: Genetics. 42, p. 49-55 7 p.

Research output: Contribution to journalArticleResearchpeer-review

Microsatellite Repeats
Technology
Alleles
Rubiaceae
Tandem Repeat Sequences

STRmix™ collaborative exercise on DNA mixture interpretation

Bright, J. A., Cheng, K., Kerr, Z., McGovern, C., Kelly, H., Moretti, T. R., Smith, M. A., Bieber, F. R., Budowle, B., Coble, M. D., Alghafri, R., Allen, P. S., Barber, A., Beamer, V., Buettner, C., Russell, M., Gehrig, C., Hicks, T., Charak, J., Cheong-Wing, K. & 34 others, Ciecko, A., Davis, C. T., Donley, M., Pedersen, N., Gartside, B., Granger, D., Greer-Ritzheimer, M. M., Reisinger, E., Kennedy, J., Grammer, E., Kaplan, M., Hansen, D., Larsen, H. J., Laureano, A., Li, C., Lien, E., Lindberg, E., Kelly, C., Mallinder, B., Malsom, S., Yacovone-Margetts, A., McWhorter, A., Prajapati, S. M., Powell, T., Shutler, G., Stevenson, K., Stonehouse, A. R., Smith, L., Murakami, J., Halsing, E., Wright, D., Clark, L., Taylor, D. A. & Buckleton, J., 1 May 2019, In : Forensic Science International: Genetics. 40, p. 1-8 8 p.

Research output: Contribution to journalArticleResearchpeer-review

DNA
Complex Mixtures
Software
2 Citations (Scopus)

Supervised Classification of CYP2D6 Genotype and Metabolizer Phenotype with Postmortem Tramadol-Exposed Finns

Wendt, F. R., Novroski, N. M. M., Rahikainen, A. L., Sajantila, A. & Budowle, B., 1 Mar 2019, In : American Journal of Forensic Medicine and Pathology. 40, 1, p. 8-18 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Tramadol
Genotype
Phenotype
Nucleotides
Peptides
4 Citations (Scopus)

The Probabilistic Genotyping Software STRmix: Utility and Evidence for its Validity

Buckleton, J. S., Bright, J. A., Gittelson, S., Moretti, T. R., Onorato, A. J., Bieber, F. R., Budowle, B. & Taylor, D. A., 1 Mar 2019, In : Journal of Forensic Sciences. 64, 2, p. 393-405 13 p.

Research output: Contribution to journalArticleResearchpeer-review

Decision Making
Software
Mathematics
Computer Systems
DNA
2018

Aircraft-assisted pilot suicides in the general aviation increased for one-year period after 11 september 2001 attack in the united states

Vuorio, A., Laukkala, T., Junttila, I., Bor, R., Budowle, B., Pukkala, E., Navathe, P. & Sajantila, A., 12 Nov 2018, In : International Journal of Environmental Research and Public Health. 15, 11, 2525.

Research output: Contribution to journalArticleResearchpeer-review

Assisted Suicide
Aviation
Aircraft
Suicide
Homicide

Challenges in investigation of diabetes-related aviation fatalities—an analysis of 1491 subsequent aviation fatalities in USA during 2011–2016

Junttila, I. S., Vuorio, A., Budowle, B., Laukkala, T. & Sajantila, A., 1 Nov 2018, In : International journal of legal medicine. 132, 6, p. 1713-1718 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Aviation
Diabetes Mellitus
Glucose
Diabetes Complications
Hypoglycemia
5 Citations (Scopus)

Comparative tolerance of two massively parallel sequencing systems to common PCR inhibitors

Elwick, K., Zeng, X., King, J., Budowle, B. & Hughes-Stamm, S., 1 Jul 2018, In : International journal of legal medicine. 132, 4, p. 983-995 13 p.

Research output: Contribution to journalArticleResearchpeer-review

High-Throughput Nucleotide Sequencing
Hemin
Melanins
Polymerase Chain Reaction
Microsatellite Repeats
2 Citations (Scopus)

Copycats in pilot aircraft-assisted suicides after the germanwings incident

Laukkala, T., Vuorio, A., Bor, R., Budowle, B., Navathe, P., Pukkala, E. & Sajantila, A., 11 Mar 2018, In : International Journal of Environmental Research and Public Health. 15, 3, 491.

Research output: Contribution to journalArticleResearchpeer-review

Assisted Suicide
Aircraft
Databases
Safety
Suicide
7 Citations (Scopus)

Current state-of-art of STR sequencing in forensic genetics

Alonso, A., Barrio, P. A., Müller, P., Köcher, S., Berger, B., Martin, P., Bodner, M., Willuweit, S., Parson, W., Roewer, L. & Budowle, B., 1 Nov 2018, In : Electrophoresis. 39, 21, p. 2655-2668 14 p.

Research output: Contribution to journalReview articleResearchpeer-review

Forensic Genetics
High-Throughput Nucleotide Sequencing
Terminology
Standardization
Commercial Catalogs
9 Citations (Scopus)

Direct PCR amplification of DNA from human bloodstains, saliva, and touch samples collected with microFLOQ® swabs

Ambers, A. D., Wiley, R., Novroski, N. & Budowle, B., 1 Jan 2018, In : Forensic Science International: Genetics. 32, p. 80-87 8 p.

Research output: Contribution to journalArticleResearchpeer-review

Touch
Saliva
Polymerase Chain Reaction
Coloring Agents
Workflow
2 Citations (Scopus)

Distinguishing genetically between the germlines of male monozygotic twins

Krawczak, M., Budowle, B., Weber-Lehmann, J. & Rolf, B., 1 Dec 2018, In : PLoS Genetics. 14, 12, e1007756.

Research output: Contribution to journalArticleResearchpeer-review

Monozygotic Twins
paternity
germ cells
Paternity
Tissue Donors
2 Citations (Scopus)

Duty of notification and aviation safety—A study of fatal aviation accidents in the United States in 2015

Vuorio, A., Budowle, B., Sajantila, A., Laukkala, T., Junttila, I., Kravik, S. E. & Griffiths, R., 13 Jun 2018, In : International Journal of Environmental Research and Public Health. 15, 6, 1258.

Research output: Contribution to journalArticleResearchpeer-review

Aviation Accidents
Aviation
Accidents
Safety
Legislation
Viverridae
Genomics
Publications
Emotions
Population
1 Citation (Scopus)

Evaluation of InnoTyper® 21 in a sample of Rio de Janeiro population as an alternative forensic panel

Moura-Neto, R. S., Mello, I. C. T., Silva, R., Maette, A. P. C., Bottino, C. G., Woerner, A. E., King, J., Wendt, F. & Budowle, B., 1 Jan 2018, In : International journal of legal medicine. 132, 1, p. 149-151 3 p.

Research output: Contribution to journalArticleResearchpeer-review

Southwestern United States
Population
Hispanic Americans
African Americans
Microsatellite Repeats
3 Citations (Scopus)

Evaluation of the precision ID mtDNA whole genome panel on two massively parallel sequencing systems

Woerner, A. E., Ambers, A. D., Wendt, F. R., King, J. L., Moura-Neto, R. S., Silva, R. & Budowle, B., 1 Sep 2018, In : Forensic Science International: Genetics. 36, p. 213-224 12 p.

Research output: Contribution to journalArticleResearchpeer-review

High-Throughput Nucleotide Sequencing
Mitochondrial Genome
Mitochondrial DNA
Haplotypes
Genome
5 Citations (Scopus)

Full-gene haplotypes refine CYP2D6 metabolizer phenotype inferences

Wendt, F. R., Sajantila, A., Moura-Neto, R. S., Woerner, A. E. & Budowle, B., 1 Jul 2018, In : International journal of legal medicine. 132, 4, p. 1007-1024 18 p.

Research output: Contribution to journalArticleResearchpeer-review

Cytochrome P-450 CYP2D6
Haplotypes
Alleles
Phenotype
Enzymes
2 Citations (Scopus)

Improved Y-STR typing for disaster victim identification, missing persons investigations, and historical human skeletal remains

Ambers, A. D., Votrubova, J., Vanek, D., Sajantila, A. & Budowle, B., 1 Nov 2018, In : International journal of legal medicine. 132, 6, p. 1545-1553 9 p.

Research output: Contribution to journalArticleResearchpeer-review

Disaster Victims
Anthropology
DNA
American Civil War
Bone and Bones
2 Citations (Scopus)

Increasing the discrimination power of ancestry- and identity-informative SNP loci within the ForenSeq™ DNA Signature Prep Kit

King, J. L., Cihlar, J. C., Novroski, N. M. M., Zeng, X., Warshauer, D. H., Seah, L. H. & Budowle, B., 1 Sep 2018, In : Forensic Science International: Genetics. 36, p. 60-76 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Single Nucleotide Polymorphism
DNA
Forensic Genetics
Southwestern United States
Viverridae

Insertion within the flanking region of the D10S1237 locus

Novroski, N. M. M., Woerner, A. E. & Budowle, B., 1 Jul 2018, In : Forensic Science International: Genetics. 35, p. e4-e6

Research output: Contribution to journalLetterResearchpeer-review

7 Citations (Scopus)

Massively parallel sequencing-enabled mixture analysis of mitochondrial DNA samples

Cihlar, J. C., Stoljarova, M., King, J. L. & Budowle, B., 1 Sep 2018, In : International Journal of Legal Medicine. 132, 5, p. 1263-1272 10 p.

Research output: Contribution to journalArticleResearchpeer-review

High-Throughput Nucleotide Sequencing
Mitochondrial DNA
Mitochondrial Genome
Ions
Haplotypes

Microbial enrichment and gene functional categories revealed on the walls of a spent fuel pool of a nuclear power plant

Silva, R., De Almeida, D. M., Cabral, B. C. A., Dias, V. H. G., De Toledo E Mello, I. C., Péterürményi, T., Woerner, A. E., De Moura Neto, R. S., Budowle, B. & Nassar, C. A. G., 1 Oct 2018, In : PLoS ONE. 13, 10, e0205228.

Research output: Contribution to journalArticleResearchpeer-review

Microbial Genes
Nuclear Power Plants
nuclear power
Spent fuels
power plants
9 Citations (Scopus)

NIST interlaboratory studies involving DNA mixtures (MIX13): A modern analysis

Buckleton, J. S., Bright, J. A., Cheng, K., Budowle, B. & Coble, M. D., 1 Nov 2018, In : Forensic Science International: Genetics. 37, p. 172-179 8 p.

Research output: Contribution to journalArticleResearchpeer-review

DNA
Canada
Alleles
cyclopropapyrroloindole

Planktonic microbial profiling in water samples from a Brazilian Amazonian reservoir

Cabral, B. C. A., Hoffmann, L., Budowle, B., Ürményi, T. P., Moura-Neto, R. S., Azevedo, S. M. F. O. & Silva, R., 1 Apr 2018, In : MicrobiologyOpen. 7, 2, e00523.

Research output: Contribution to journalArticleResearchpeer-review

Cyanobacteria
Fresh Water
Microcystis
Betaproteobacteria
Plankton
1 Citation (Scopus)

Potential highly polymorphic short tandem repeat markers for enhanced forensic identity testing

Novroski, N. M. M., Woerner, A. E. & Budowle, B., 1 Nov 2018, In : Forensic Science International: Genetics. 37, p. 162-171 10 p.

Research output: Contribution to journalArticleResearchpeer-review

Microsatellite Repeats
Alleles
High-Throughput Nucleotide Sequencing
Rubiaceae
DNA Fingerprinting
1 Citation (Scopus)

Predicted activity of UGT2B7, ABCB1, OPRM1, and COMT using full-gene haplotypes and their association with the CYP2D6-inferred metabolizer phenotype

Wendt, F. R., Sajantila, A. & Budowle, B., 1 Mar 2018, In : Forensic Science International: Genetics. 33, p. 48-58 11 p.

Research output: Contribution to journalArticleResearchpeer-review

Cytochrome P-450 CYP2D6
Haplotypes
Tramadol
Phenotype
Genes
1 Citation (Scopus)

Privacy and genetic genealogy data

Greytak, E. M., Kaye, D. H., Budowle, B., Moore, C. C. & Armentrout, S. L., 31 Aug 2018, In : Science. 361, 6405, 1 p.

Research output: Contribution to journalLetterResearchpeer-review

Genetic Privacy
Genealogy and Heraldry
2 Citations (Scopus)

Stable Isotope and Radiocarbon Dating of the Remains of the Medieval Royal House of Aragon (Spain) Shed Light on Their Diets, Life Histories and Identities

Martínez-Jarreta, B., Sosa, C., Laliena, C., Budowle, B. & Hedges, R. E. M., 1 Apr 2018, In : Archaeometry. 60, 2, p. 366-382 17 p.

Research output: Contribution to journalArticleResearchpeer-review

Spain
European history
Muslim
evidence
Group
10 Citations (Scopus)

Targeted sequencing of clade-specific markers from skin microbiomes for forensic human identification

Schmedes, S. E., Woerner, A. E., Novroski, N. M. M., Wendt, F. R., King, J. L., Stephens, K. M. & Budowle, B., 1 Jan 2018, In : Forensic Science International: Genetics. 32, p. 50-61 12 p.

Research output: Contribution to journalArticleResearchpeer-review

Forensic Anthropology
Microbiota
Skin
Manubrium
Learning
2017
7 Citations (Scopus)

A technique for setting analytical thresholds in massively parallel sequencing-based forensic DNA analysis

Young, B., King, J. L., Budowle, B. & Armogida, L., 1 May 2017, In : PLoS ONE. 12, 5, e0178005.

Research output: Contribution to journalArticleResearchpeer-review

High-Throughput Nucleotide Sequencing
analytical methods
Capillary electrophoresis
DNA
Microarrays
2 Citations (Scopus)

Attention-deficit/hyperactivity disorder and fatal accidents in aviation medicine

Laukkala, T., Bor, R., Budowle, B., Sajantila, A., Navathe, P., Sainio, M. & Vuorio, A., 1 Sep 2017, In : Aerospace Medicine and Human Performance. 88, 9, p. 871-875 5 p.

Research output: Contribution to journalArticleResearchpeer-review

Aerospace Medicine
Attention Deficit Disorder with Hyperactivity
Accidents
Aviation Accidents
Safety
2 Citations (Scopus)

Bipolar disorder in aviation medicine

Vuorio, A., Laukkala, T., Navathe, P., Budowle, B., Bor, R. & Sajantila, A., 1 Jan 2017, In : Aerospace Medicine and Human Performance. 88, 1, p. 42-47 6 p.

Research output: Contribution to journalReview articleResearchpeer-review

Aerospace Medicine
Bipolar Disorder
Aviation Accidents
Safety
Psychiatry

Comparison of standard capillary electrophoresis based genotyping method and ForenSeq DNA Signature Prep kit (Illumina) on a set of challenging samples

Votrubova, J., Ambers, A. D., Budowle, B. & Vanek, D., 1 Dec 2017, In : Forensic Science International: Genetics Supplement Series. 6, p. e140-e142

Research output: Contribution to journalArticleResearchpeer-review

Capillary Electrophoresis
DNA
Genomics
8 Citations (Scopus)

Development and validation of a novel multiplexed DNA analysis system, InnoTyper® 21

Brown, H., Thompson, R., Murphy, G., Peters, D., La Rue, B., King, J., Montgomery, A. H., Carroll, M., Baus, J., Sinha, S., Wendt, F. R., Song, B., Chakraborty, R., Budowle, B. & Sinha, S. K., 1 Jul 2017, In : Forensic Science International: Genetics. 29, p. 80-99 20 p.

Research output: Contribution to journalArticleResearchpeer-review

Alu Elements
DNA
Human Genome
Population
Alleles
1 Citation (Scopus)

Erratum: More Comprehensive Forensic Genetic Marker Analyses for Accurate Human Remains Identification Using Massively Parallel DNA Sequencing[BMC Genomics. 2016;17 Suppl 9:750.] DOI:10.1186/s12864-016-3087-2

Ambers, A. D., Cihlar, J. C., King, J. L., Stoljarova, M., Gill-King, H., Assidi, M., Abu-Elmagd, M., Buhmeida, A., Al-Qahtani, M. & Budowle, B., 20 Apr 2017, In : BMC Genomics. 18, 1, 312.

Research output: Contribution to journalComment/debateResearch

Forensic Genetics
High-Throughput Nucleotide Sequencing
Forensic Anthropology
Genomics
DNA Sequence Analysis
13 Citations (Scopus)

European survey on forensic applications of massively parallel sequencing

Alonso, A., Müller, P., Roewer, L., Willuweit, S., Budowle, B. & Parson, W., 1 Jul 2017, In : Forensic Science International: Genetics. 29, p. e23-e25

Research output: Contribution to journalLetterResearchpeer-review

High-Throughput Nucleotide Sequencing
Surveys and Questionnaires
16 Citations (Scopus)

Fast STR allele identification with STRait Razor 3.0

Woerner, A. E., King, J. L. & Budowle, B., 1 Sep 2017, In : Forensic Science International: Genetics. 30, p. 18-23 6 p.

Research output: Contribution to journalArticleResearchpeer-review

Microsatellite Repeats
Haplotypes
Alleles
High-Throughput Nucleotide Sequencing
Computer Simulation
17 Citations (Scopus)

Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans

Wendt, F. R., King, J. L., Novroski, N. M. M., Cihlar, J. C., Ng, J., Oldt, R. F., McCulloh, K. L., Weise, J. A., Smith, D. G., Kanthaswamy, S. & Budowle, B., 1 May 2017, In : Forensic Science International: Genetics. 28, p. 146-154 9 p.

Research output: Contribution to journalArticleResearchpeer-review

North American Indians
Microsatellite Repeats
Single Nucleotide Polymorphism
DNA
Population
5 Citations (Scopus)

Flanking variation influences rates of stutter in simple repeats

Woerner, A. E., King, J. L. & Budowle, B., 17 Nov 2017, In : Genes. 8, 11, 329.

Research output: Contribution to journalArticleResearchpeer-review

Alleles
Tandem Repeat Sequences
Microsatellite Repeats
Haplotypes
DNA
11 Citations (Scopus)

Forensic human identification using skin microbiomes

Schmedes, S. E., Woerner, A. E. & Budowle, B., 1 Nov 2017, In : Applied and Environmental Microbiology. 83, 22, e01672-17.

Research output: Contribution to journalArticleResearchpeer-review

Forensic Anthropology
Microbiota
skin (animal)
skin
Skin
3 Citations (Scopus)

General aviation pilots over 70 years old

Vuorio, A., Asmayawati, S., Budowle, B., Griffiths, R., Strandberg, T., Kuoppala, J. & Sajantila, A., 1 Feb 2017, In : Aerospace Medicine and Human Performance. 88, 2, p. 142-145 4 p.

Research output: Contribution to journalArticleResearchpeer-review

Aviation
Aviation Accidents
Accidents
Polypharmacy
Pilots
3 Citations (Scopus)

Global genetic variation of select opiate metabolism genes in self-reported healthy individuals

Wendt, F. R., Pathak, G., Sajantila, A., Chakraborty, R. & Budowle, B., 11 Apr 2017, (Accepted/In press) In : Pharmacogenomics Journal.

Research output: Contribution to journalArticleResearchpeer-review

Opiate Alkaloids
Pharmacogenetics
Genes
High-Throughput Nucleotide Sequencing
Cytochrome P-450 CYP2D6