Find Research Outputs

Search concepts
Selected Filters
2019

A genome-wide association study of tramadol metabolism from post-mortem samples

Wendt, F. R., Rahikainen, A. L., King, J. L., Sajantila, A. & Budowle, B., 1 Jan 2019, In : Pharmacogenomics Journal.

Research output: Contribution to journalArticle

Tramadol
Genome-Wide Association Study
Polypharmacy
Phenotype
Peptides

A novel phylogenetic approach for de novo discovery of putative nuclear mitochondrial (pNumt) haplotypes

Smart, U., Budowle, B., Ambers, A., Soares Moura-Neto, R., Silva, R. & Woerner, A. E., 1 Nov 2019, In : Forensic Science International: Genetics. 43, 102146.

Research output: Contribution to journalArticle

Mitochondrial Genome
Haplotypes
Noise
Forensic Genetics
Databases

A pathway-driven predictive model of tramadol pharmacogenetics

Wendt, F. R., Novroski, N. M. M., Rahikainen, A. L., Sajantila, A. & Budowle, B., 1 Jul 2019, In : European Journal of Human Genetics. 27, 7, p. 1143-1156 14 p.

Research output: Contribution to journalArticle

Tramadol
Pharmacogenetics
Peptides
Phenotype
Genes
3 Citations (Scopus)

Assessment of impact of DNA extraction methods on analysis of human remain samples on massively parallel sequencing success

Zeng, X., Elwick, K., Mayes, C., Takahashi, M., King, J. L., Gangitano, D., Budowle, B. & Hughes-Stamm, S., 14 Jan 2019, In : International journal of legal medicine. 133, 1, p. 51-58 8 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
DNA
Bone and Bones
Hair
Single Nucleotide Polymorphism
1 Citation (Scopus)

Compound stutter in D2S1338 and D12S391

Woerner, A. E., King, J. L. & Budowle, B., 1 Mar 2019, In : Forensic Science International: Genetics. 39, p. 50-56 7 p.

Research output: Contribution to journalArticle

Linear Models
Nucleotides
High-Throughput Nucleotide Sequencing
1 Citation (Scopus)

Copan microFLOQ® Direct Swab collection of bloodstains, saliva, and semen on cotton cloth

Sherier, A. J., Kieser, R. E., Novroski, N. M. M., Wendt, F. R., King, J. L., Woerner, A. E., Ambers, A., Garofano, P. & Budowle, B., 1 Jan 2019, In : International journal of legal medicine.

Research output: Contribution to journalArticle

Semen
Saliva
Coloring Agents
Polymerase Chain Reaction
Blood Stains

Evaluation of mitogenome sequence concordance, heteroplasmy detection, and haplogrouping in a worldwide lineage study using the Precision ID mtDNA Whole Genome Panel

Strobl, C., Churchill Cihlar, J., Lagacé, R., Wootton, S., Roth, C., Huber, N., Schnaller, L., Zimmermann, B., Huber, G., Lay Hong, S., Moura-Neto, R., Silva, R., Alshamali, F., Souto, L., Anslinger, K., Egyed, B., Jankova-Ajanovska, R., Casas-Vargas, A., Usaquén, W., Silva, D. & 10 others, Barletta-Carrillo, C., Tineo, D. H., Vullo, C., Würzner, R., Xavier, C., Gusmão, L., Niederstätter, H., Bodner, M., Budowle, B. & Parson, W., Sep 2019, In : Forensic Science International: Genetics. 42, p. 244-251 8 p.

Research output: Contribution to journalArticle

Mitochondrial Genome
Mitochondrial DNA
Forensic Genetics
Genome
High-Throughput Nucleotide Sequencing
1 Citation (Scopus)
Microsatellite Repeats
Alleles
DNA
Forensic Genetics
Population Genetics

Exploring the 1000 Genomes Project haplotype reporting for the CYP2D6 pharmacogene

Wendt, F. R., Woerner, A. E., Sajantila, A., Moura-Neto, R. S. & Budowle, B., 1 May 2019, In : International journal of legal medicine. 133, 3, p. 807-810 4 p.

Research output: Contribution to journalLetter

Cytochrome P-450 CYP2D6
Haplotypes
Genome
2 Citations (Scopus)

Forensic human identification with targeted microbiome markers using nearest neighbor classification

Woerner, A. E., Novroski, N. M. M., Wendt, F. R., Ambers, A. D., Wiley, R., Schmedes, S. E. & Budowle, B., 1 Jan 2019, In : Forensic Science International: Genetics. 38, p. 130-139 10 p.

Research output: Contribution to journalArticle

Forensic Anthropology
Microbiota
Forensic Genetics
Population Genetics
Phylogeny

Human trafficking – Multinational challenge for forensic science

Buś, M. M., Schellberg, T. & Budowle, B., 1 Jan 2019, (Accepted/In press) In : Forensic Science International: Genetics Supplement Series.

Research output: Contribution to journalArticle

Human Trafficking
Forensic Sciences
Forensic Anthropology
DNA
Databases

Linkage, recombination, and mutation rate analyses of 19 X-chromosomal STR loci in Chinese Southern Han pedigrees

Yang, X., Chen, Y., Zeng, X., Chen, L., Liu, C., Liu, H., Xu, Q., Budowle, B. & Liu, C., 1 Nov 2019, In : International journal of legal medicine. 133, 6, p. 1691-1698 8 p.

Research output: Contribution to journalArticle

Linkage Disequilibrium
Mutation Rate
Pedigree
Genetic Recombination
Haplotypes
1 Citation (Scopus)
Microsatellite Repeats
Technology
Alleles
Rubiaceae
Tandem Repeat Sequences
4 Citations (Scopus)

STRmix™ collaborative exercise on DNA mixture interpretation

Bright, J. A., Cheng, K., Kerr, Z., McGovern, C., Kelly, H., Moretti, T. R., Smith, M. A., Bieber, F. R., Budowle, B., Coble, M. D., Alghafri, R., Allen, P. S., Barber, A., Beamer, V., Buettner, C., Russell, M., Gehrig, C., Hicks, T., Charak, J., Cheong-Wing, K. & 34 others, Ciecko, A., Davis, C. T., Donley, M., Pedersen, N., Gartside, B., Granger, D., Greer-Ritzheimer, M. M., Reisinger, E., Kennedy, J., Grammer, E., Kaplan, M., Hansen, D., Larsen, H. J., Laureano, A., Li, C., Lien, E., Lindberg, E., Kelly, C., Mallinder, B., Malsom, S., Yacovone-Margetts, A., McWhorter, A., Prajapati, S. M., Powell, T., Shutler, G., Stevenson, K., Stonehouse, A. R., Smith, L., Murakami, J., Halsing, E., Wright, D., Clark, L., Taylor, D. A. & Buckleton, J., May 2019, In : Forensic Science International: Genetics. 40, p. 1-8 8 p.

Research output: Contribution to journalArticle

DNA
Complex Mixtures
Software
2 Citations (Scopus)

Supervised Classification of CYP2D6 Genotype and Metabolizer Phenotype with Postmortem Tramadol-Exposed Finns

Wendt, F. R., Novroski, N. M. M., Rahikainen, A. L., Sajantila, A. & Budowle, B., 1 Mar 2019, In : American Journal of Forensic Medicine and Pathology. 40, 1, p. 8-18 11 p.

Research output: Contribution to journalArticle

Tramadol
Genotype
Phenotype
Nucleotides
Peptides
5 Citations (Scopus)

The Probabilistic Genotyping Software STRmix: Utility and Evidence for its Validity

Buckleton, J. S., Bright, J. A., Gittelson, S., Moretti, T. R., Onorato, A. J., Bieber, F. R., Budowle, B. & Taylor, D. A., 1 Mar 2019, In : Journal of Forensic Sciences. 64, 2, p. 393-405 13 p.

Research output: Contribution to journalArticle

Decision Making
Software
Mathematics
Computer Systems
DNA

Utility of the Ion S5™ and MiSeq FGx™ sequencing platforms to characterize challenging human remains

Elwick, K., Bus, M. M., King, J. L., Chang, J., Hughes-Stamm, S. & Budowle, B., Nov 2019, In : Legal Medicine. 41, 101623.

Research output: Contribution to journalArticle

Microsatellite Repeats
High-Throughput Nucleotide Sequencing
Capillary Electrophoresis
Ions
DNA
2018

Aircraft-assisted pilot suicides in the general aviation increased for one-year period after 11 september 2001 attack in the united states

Vuorio, A., Laukkala, T., Junttila, I., Bor, R., Budowle, B., Pukkala, E., Navathe, P. & Sajantila, A., 12 Nov 2018, In : International Journal of Environmental Research and Public Health. 15, 11, 2525.

Research output: Contribution to journalArticle

Assisted Suicide
Aviation
Aircraft
Suicide
Homicide

Challenges in investigation of diabetes-related aviation fatalities—an analysis of 1491 subsequent aviation fatalities in USA during 2011–2016

Junttila, I. S., Vuorio, A., Budowle, B., Laukkala, T. & Sajantila, A., 1 Nov 2018, In : International journal of legal medicine. 132, 6, p. 1713-1718 6 p.

Research output: Contribution to journalArticle

Aviation
Diabetes Mellitus
Glucose
Diabetes Complications
Hypoglycemia
7 Citations (Scopus)

Comparative tolerance of two massively parallel sequencing systems to common PCR inhibitors

Elwick, K., Zeng, X., King, J., Budowle, B. & Hughes-Stamm, S., 1 Jul 2018, In : International journal of legal medicine. 132, 4, p. 983-995 13 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Hemin
Melanins
Polymerase Chain Reaction
Microsatellite Repeats
3 Citations (Scopus)

Copycats in pilot aircraft-assisted suicides after the germanwings incident

Laukkala, T., Vuorio, A., Bor, R., Budowle, B., Navathe, P., Pukkala, E. & Sajantila, A., 11 Mar 2018, In : International Journal of Environmental Research and Public Health. 15, 3, 491.

Research output: Contribution to journalArticle

Assisted Suicide
Aircraft
Databases
Safety
Suicide
10 Citations (Scopus)

Current state-of-art of STR sequencing in forensic genetics

Alonso, A., Barrio, P. A., Müller, P., Köcher, S., Berger, B., Martin, P., Bodner, M., Willuweit, S., Parson, W., Roewer, L. & Budowle, B., Nov 2018, In : Electrophoresis. 39, 21, p. 2655-2668 14 p.

Research output: Contribution to journalReview article

Forensic Genetics
High-Throughput Nucleotide Sequencing
Terminology
Standardization
Commercial Catalogs
17 Citations (Scopus)

Direct PCR amplification of DNA from human bloodstains, saliva, and touch samples collected with microFLOQ® swabs

Ambers, A., Wiley, R., Novroski, N. & Budowle, B., Jan 2018, In : Forensic Science International: Genetics. 32, p. 80-87 8 p.

Research output: Contribution to journalArticle

Touch
Saliva
Polymerase Chain Reaction
Coloring Agents
Workflow
2 Citations (Scopus)

Distinguishing genetically between the germlines of male monozygotic twins

Krawczak, M., Budowle, B., Weber-Lehmann, J. & Rolf, B., 1 Dec 2018, In : PLoS Genetics. 14, 12, e1007756.

Research output: Contribution to journalArticle

Monozygotic Twins
paternity
germ cells
Paternity
Tissue Donors
2 Citations (Scopus)

Duty of notification and aviation safety—A study of fatal aviation accidents in the United States in 2015

Vuorio, A., Budowle, B., Sajantila, A., Laukkala, T., Junttila, I., Kravik, S. E. & Griffiths, R., 13 Jun 2018, In : International Journal of Environmental Research and Public Health. 15, 6, 1258.

Research output: Contribution to journalArticle

Aviation Accidents
Aviation
Accidents
Safety
Legislation
3 Citations (Scopus)

Evaluation of InnoTyper® 21 in a sample of Rio de Janeiro population as an alternative forensic panel

Moura-Neto, R. S., Mello, I. C. T., Silva, R., Maette, A. P. C., Bottino, C. G., Woerner, A. E., King, J., Wendt, F. & Budowle, B., 1 Jan 2018, In : International journal of legal medicine. 132, 1, p. 149-151 3 p.

Research output: Contribution to journalArticle

Southwestern United States
Population
Hispanic Americans
African Americans
Microsatellite Repeats
7 Citations (Scopus)

Evaluation of the precision ID mtDNA whole genome panel on two massively parallel sequencing systems

Woerner, A. E., Ambers, A. D., Wendt, F. R., King, J. L., Moura-Neto, R. S., Silva, R. & Budowle, B., 1 Sep 2018, In : Forensic Science International: Genetics. 36, p. 213-224 12 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Mitochondrial Genome
Mitochondrial DNA
Haplotypes
Genome
6 Citations (Scopus)

Full-gene haplotypes refine CYP2D6 metabolizer phenotype inferences

Wendt, F. R., Sajantila, A., Moura-Neto, R. S., Woerner, A. E. & Budowle, B., 1 Jul 2018, In : International journal of legal medicine. 132, 4, p. 1007-1024 18 p.

Research output: Contribution to journalArticle

Cytochrome P-450 CYP2D6
Haplotypes
Alleles
Phenotype
Enzymes
4 Citations (Scopus)

Improved Y-STR typing for disaster victim identification, missing persons investigations, and historical human skeletal remains

Ambers, A., Votrubova, J., Vanek, D., Sajantila, A. & Budowle, B., 1 Nov 2018, In : International journal of legal medicine. 132, 6, p. 1545-1553 9 p.

Research output: Contribution to journalArticle

Disaster Victims
Anthropology
DNA
American Civil War
Bone and Bones
7 Citations (Scopus)

Increasing the discrimination power of ancestry- and identity-informative SNP loci within the ForenSeq™ DNA Signature Prep Kit

King, J. L., Cihlar, J. C., Novroski, N. M. M., Zeng, X., Warshauer, D. H., Seah, L. H. & Budowle, B., 1 Sep 2018, In : Forensic Science International: Genetics. 36, p. 60-76 17 p.

Research output: Contribution to journalArticle

Single Nucleotide Polymorphism
DNA
Forensic Genetics
Southwestern United States
Viverridae

Insertion within the flanking region of the D10S1237 locus

Novroski, N. M. M., Woerner, A. E. & Budowle, B., 1 Jul 2018, In : Forensic Science International: Genetics. 35, p. e4-e6

Research output: Contribution to journalLetter

11 Citations (Scopus)

Massively parallel sequencing-enabled mixture analysis of mitochondrial DNA samples

Cihlar, J. C., Stoljarova, M., King, J. L. & Budowle, B., 1 Sep 2018, In : International Journal of Legal Medicine. 132, 5, p. 1263-1272 10 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Mitochondrial DNA
Mitochondrial Genome
Ions
Haplotypes

Microbial enrichment and gene functional categories revealed on the walls of a spent fuel pool of a nuclear power plant

Silva, R., De Almeida, D. M., Cabral, B. C. A., Dias, V. H. G., De Toledo E Mello, I. C., Péterürményi, T., Woerner, A. E., De Moura Neto, R. S., Budowle, B. & Nassar, C. A. G., Oct 2018, In : PLoS ONE. 13, 10, e0205228.

Research output: Contribution to journalArticle

Microbial Genes
Nuclear Power Plants
nuclear power
Spent fuels
power plants
12 Citations (Scopus)

NIST interlaboratory studies involving DNA mixtures (MIX13): A modern analysis

Buckleton, J. S., Bright, J. A., Cheng, K., Budowle, B. & Coble, M. D., 1 Nov 2018, In : Forensic Science International: Genetics. 37, p. 172-179 8 p.

Research output: Contribution to journalArticle

DNA
Canada
Alleles
cyclopropapyrroloindole

Planktonic microbial profiling in water samples from a Brazilian Amazonian reservoir

Cabral, B. C. A., Hoffmann, L., Budowle, B., Ürményi, T. P., Moura-Neto, R. S., Azevedo, S. M. F. O. & Silva, R., Apr 2018, In : MicrobiologyOpen. 7, 2, e00523.

Research output: Contribution to journalArticle

Cyanobacteria
Fresh Water
Microcystis
Betaproteobacteria
Plankton
3 Citations (Scopus)

Potential highly polymorphic short tandem repeat markers for enhanced forensic identity testing

Novroski, N. M. M., Woerner, A. E. & Budowle, B., 1 Nov 2018, In : Forensic Science International: Genetics. 37, p. 162-171 10 p.

Research output: Contribution to journalArticle

Microsatellite Repeats
Alleles
High-Throughput Nucleotide Sequencing
Rubiaceae
DNA Fingerprinting
1 Citation (Scopus)
Cytochrome P-450 CYP2D6
Haplotypes
Tramadol
Phenotype
Genes
3 Citations (Scopus)

Privacy and genetic genealogy data

Greytak, E. M., Kaye, D. H., Budowle, B., Moore, C. C. & Armentrout, S. L., 31 Aug 2018, In : Science. 361, 6405, 1 p.

Research output: Contribution to journalLetter

Genetic Privacy
Genealogy and Heraldry
4 Citations (Scopus)

Stable Isotope and Radiocarbon Dating of the Remains of the Medieval Royal House of Aragon (Spain) Shed Light on Their Diets, Life Histories and Identities

Martínez-Jarreta, B., Sosa, C., Laliena, C., Budowle, B. & Hedges, R. E. M., 1 Apr 2018, In : Archaeometry. 60, 2, p. 366-382 17 p.

Research output: Contribution to journalArticle

Spain
European history
Muslim
evidence
Group
13 Citations (Scopus)

Targeted sequencing of clade-specific markers from skin microbiomes for forensic human identification

Schmedes, S. E., Woerner, A. E., Novroski, N. M. M., Wendt, F. R., King, J. L., Stephens, K. M. & Budowle, B., 1 Jan 2018, In : Forensic Science International: Genetics. 32, p. 50-61 12 p.

Research output: Contribution to journalArticle

Forensic Anthropology
Microbiota
Skin
Manubrium
Learning
2017
10 Citations (Scopus)

A technique for setting analytical thresholds in massively parallel sequencing-based forensic DNA analysis

Young, B., King, J. L., Budowle, B. & Armogida, L., 1 May 2017, In : PLoS ONE. 12, 5, e0178005.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
analytical methods
Capillary electrophoresis
DNA
Microarrays
4 Citations (Scopus)

Attention-deficit/hyperactivity disorder and fatal accidents in aviation medicine

Laukkala, T., Bor, R., Budowle, B., Sajantila, A., Navathe, P., Sainio, M. & Vuorio, A., 1 Sep 2017, In : Aerospace Medicine and Human Performance. 88, 9, p. 871-875 5 p.

Research output: Contribution to journalArticle

Aerospace Medicine
Attention Deficit Disorder with Hyperactivity
Accidents
Aviation Accidents
Safety
2 Citations (Scopus)

Bipolar disorder in aviation medicine

Vuorio, A., Laukkala, T., Navathe, P., Budowle, B., Bor, R. & Sajantila, A., 1 Jan 2017, In : Aerospace Medicine and Human Performance. 88, 1, p. 42-47 6 p.

Research output: Contribution to journalReview article

Aerospace Medicine
Bipolar Disorder
Aviation Accidents
Safety
Psychiatry
1 Citation (Scopus)
Capillary Electrophoresis
DNA
Genomics
9 Citations (Scopus)

Development and validation of a novel multiplexed DNA analysis system, InnoTyper® 21

Brown, H., Thompson, R., Murphy, G., Peters, D., La Rue, B., King, J., Montgomery, A. H., Carroll, M., Baus, J., Sinha, S., Wendt, F. R., Song, B., Chakraborty, R., Budowle, B. & Sinha, S. K., 1 Jul 2017, In : Forensic Science International: Genetics. 29, p. 80-99 20 p.

Research output: Contribution to journalArticle

Alu Elements
DNA
Human Genome
Population
Alleles
2 Citations (Scopus)

Erratum: More Comprehensive Forensic Genetic Marker Analyses for Accurate Human Remains Identification Using Massively Parallel DNA Sequencing[BMC Genomics. 2016;17 Suppl 9:750.] DOI:10.1186/s12864-016-3087-2

Ambers, A. D., Churchill, J. D., King, J. L., Stoljarova, M., Gill-King, H., Assidi, M., Abu-Elmagd, M., Buhmeida, A., Al-Qahtani, M. & Budowle, B., 20 Apr 2017, In : BMC Genomics. 18, 1, 312.

Research output: Contribution to journalComment/debate

Forensic Genetics
High-Throughput Nucleotide Sequencing
Forensic Anthropology
Genomics
DNA Sequence Analysis
14 Citations (Scopus)

European survey on forensic applications of massively parallel sequencing

Alonso, A., Müller, P., Roewer, L., Willuweit, S., Budowle, B. & Parson, W., 1 Jul 2017, In : Forensic Science International: Genetics. 29, p. e23-e25

Research output: Contribution to journalLetter

High-Throughput Nucleotide Sequencing
Surveys and Questionnaires
26 Citations (Scopus)

Fast STR allele identification with STRait Razor 3.0

Woerner, A. E., King, J. L. & Budowle, B., 1 Sep 2017, In : Forensic Science International: Genetics. 30, p. 18-23 6 p.

Research output: Contribution to journalArticle

Microsatellite Repeats
Haplotypes
Alleles
High-Throughput Nucleotide Sequencing
Computer Simulation
17 Citations (Scopus)

Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans

Wendt, F. R., King, J. L., Novroski, N. M. M., Cihlar, J. C., Ng, J., Oldt, R. F., McCulloh, K. L., Weise, J. A., Smith, D. G., Kanthaswamy, S. & Budowle, B., 1 May 2017, In : Forensic Science International: Genetics. 28, p. 146-154 9 p.

Research output: Contribution to journalArticle

North American Indians
Microsatellite Repeats
Single Nucleotide Polymorphism
DNA
Population