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Research Output 2003 2019

  • 590 Citations
  • 12 h-Index
  • 27 Article
  • 1 Chapter
  • 1 Conference contribution
  • 1 Review article
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Article
2019

Bacterial microbiomes of Ixodes scapularis ticks collected from Massachusetts and Texas, USA

Thapa, S., Zhang, Y. & Allen, M. S., 24 Jun 2019, In : BMC Microbiology. 19, 1, 138.

Research output: Contribution to journalArticle

Open Access
Ixodes
Microbiota
Ticks
Rickettsia
Geography
2 Citations (Scopus)

Effects of temperature on bacterial microbiome composition in Ixodes scapularis ticks

Thapa, S., Zhang, Y. & Allen, M. S., May 2019, In : MicrobiologyOpen. 8, 5, e00719.

Research output: Contribution to journalArticle

Ixodes
Microbiota
Ticks
Temperature
Rickettsia

Immunological responses to the relapsing fever spirochete borrelia turicatae in infected rhesus macaques: Implications for pathogenesis and diagnosis

Embers, M. E., Krishnavajhala, A., Armstrong, B. A., Curtis, M. W., Pahar, B., Wilder, H. K., Allen, M. S., Beare, P. A., Hasenkampf, N. R. & Lopez, J. E., 1 Apr 2019, In : Infection and Immunity. 87, 4, e00900.

Research output: Contribution to journalArticle

Relapsing Fever
Borrelia
Spirochaetales
Macaca mulatta
Primates
2018
11 Citations (Scopus)

Alterations to the Intestinal Microbiome and Metabolome of Pimephales promelas and Mus musculus Following Exposure to Dietary Methylmercury

Bridges, K. N., Zhang, Y., Curran, T. E., Magnuson, J. T., Venables, B. J., Durrer, K. E., Allen, M. S. & Roberts, A. P., 7 Aug 2018, In : Environmental Science and Technology. 52, 15, p. 8774-8784 11 p.

Research output: Contribution to journalArticle

methylmercury
Fish
Neurodegenerative diseases
teleost
Hatches

Variations of the lung microbiome and immune response in mechanically ventilated surgical patients

Huebinger, R. M., Smith, A. D., Zhang, Y., Monson, N. L., Ireland, S. J., Barber, R. C., Kubasiak, J. C., Minshall, C. T., Minei, J. P., Wolf, S. E. & Allen, M. S., Oct 2018, In : PLoS ONE. 13, 10, e0205788.

Research output: Contribution to journalArticle

Microbiota
Respiratory System
lungs
immune response
Cytokines
2017
12 Citations (Scopus)

Genetically engineered probiotic for the treatment of phenylketonuria (PKU); Assessment of a novel treatment in vitro and in the PAHenu2 mouse model of PKU

Durrer, K. E., Allen, M. S. & Von Herbing, I. H., May 2017, In : PLoS ONE. 12, 5, e0176286.

Research output: Contribution to journalArticle

phenylketonuria
Phenylketonurias
Probiotics
Phenylalanine
probiotics

Genome sequence of a Providencia stuartii strain isolated from Lucilia sericata salivary glands

Yuan, Y., Zhang, Y., Fu, S., Crippen, T. L., Visi, D. K., Eric Benbow, M., Allen, M. S., Tomberlin, J. K., Sze, S. H. & Tarone, A. M., 1 Jan 2017, In : Genome Announcements. 5, 17, e00250-17.

Research output: Contribution to journalArticle

Providencia
Salivary Glands
Diptera
Genome
Proteus mirabilis
5 Citations (Scopus)

Spatial Microbial Composition Along the Gastrointestinal Tract of Captive Attwater’s Prairie Chicken

Zhang, Y., Simon, S. E., Johnson, J. A. & Allen, M. S., 1 May 2017, In : Microbial Ecology. 73, 4, p. 966-977 12 p.

Research output: Contribution to journalArticle

prairie
gastrointestinal system
cloaca
microorganisms
sampling
4 Citations (Scopus)

Validation of droplet digital PCR for the detection and absolute quantification of Borrelia DNA in Ixodes scapularis ticks

King, J. L., Smith, A. D., Mitchell, E. A. & Allen, M. S., 1 Apr 2017, In : Parasitology. 144, 4, p. 359-367 9 p.

Research output: Contribution to journalArticle

Borrelia
Ixodes
Spirochaetales
Ixodes scapularis
Ticks
2016
1 Citation (Scopus)

Common lung microbiome identified among mechanically ventilated surgical patients

Smith, A. D., Zhang, Y., Barber, R. C., Minshall, C. T., Huebinger, R. M. & Allen, M. S., Nov 2016, In : PLoS ONE. 11, 11, e0166313.

Research output: Contribution to journalArticle

Microbiota
Bacteria
lungs
Bronchoalveolar Lavage
Lung
5 Citations (Scopus)
Thauera
Flocculation
exopolysaccharides
flocculation
mutation
13 Citations (Scopus)

Frequency and distribution of rickettsiae, borreliae, and ehrlichiae detected in human-parasitizing ticks, Texas, USA

Mitchell, E. A., Williamson, P. C., Billingsley, P. M., Seals, J. P., Ferguson, E. E. & Allen, M. S., 1 Feb 2016, In : Emerging Infectious Diseases. 22, 2, p. 312-315 4 p.

Research output: Contribution to journalArticle

Ehrlichia
Borrelia
Rickettsia
Ticks
Bacterial DNA
3 Citations (Scopus)

Genome sequence of a Proteus mirabilis strain isolated from the salivary glands of larval Lucilia sericata

Yuan, Y., Zhang, Y., Fu, S., Crippen, T. L., Visi, D. K., Benbow, M. E., Allen, M. S., Tomberlin, J. K., Sze, S. H. & Tarone, A. M., 1 Jan 2016, In : Genome Announcements. 4, 4, e00672-16.

Research output: Contribution to journalArticle

Proteus mirabilis
Salivary Glands
Genome
Oviposition
Forensic Medicine
2015
1 Citation (Scopus)

Rhodopseudomonas palustris CGA010 proteome implicates extracytoplasmic function sigma factor in stress response

Allen, M. S., Hurst, G. B., Lu, T. Y. S., Perry, L. M., Pan, C., Lankford, P. K. & Pelletier, D. A., 1 Jan 2015, In : Journal of Proteome Research. 14, 5, p. 2158-2168 11 p.

Research output: Contribution to journalArticle

Rhodopseudomonas
Sigma Factor
Proteome
Genes
Proteins
2014
10 Citations (Scopus)

Effects of chemical versus enzymatic processing of kenaf fibers on poly(hydroxybutyrate-co-valerate)/poly(butylene adipate-co-terephthalate) composite properties

Yang, B., Nar, M., Visi, D. K., Allen, M. S., Ayre, B., Webber, C. L., Lu, H. & D'Souza, N. A., 1 Jan 2014, In : Composites Part B: Engineering. 56, p. 926-933 8 p.

Research output: Contribution to journalArticle

Kenaf fibers
Hydroxybutyrates
Valerates
Polygalacturonase
Fibers
4 Citations (Scopus)

Phylogenetic relationship of serovar C-1 isolates of avibacterium paragallinarum

García-Sánchez, A., Morales-Erasto, V., Talavera-Rojas, M., Robles-González, F., Allen, M. S., Blackall, P. J. & Soriano-Vargas, E., 1 Jan 2014, In : Avian Diseases. 58, 1, p. 143-146 4 p.

Research output: Contribution to journalArticle

Avibacterium paragallinarum
serotypes
phylogeny
16S Ribosomal RNA
Ecuador
2013
8 Citations (Scopus)

Investigation of the bacterial retting community of kenaf (Hibiscus cannabinus) under different conditions using next-generation semiconductor sequencing

Visi, D. K., D'Souza, N., Ayre, B. G., Webber, C. L. & Allen, M. S., 1 May 2013, In : Journal of Industrial Microbiology and Biotechnology. 40, 5, p. 465-475 11 p.

Research output: Contribution to journalArticle

Hibiscus
Semiconductors
Ponds
Bacteria
Plant DNA
39 Citations (Scopus)

Preliminary Assessment of Microbiome Changes Following Blood-Feeding and Survivorship in the Amblyomma americanum Nymph-to-Adult Transition using Semiconductor Sequencing

Menchaca, A. C., Visi, D. K., Strey, O. F., Teel, P. D., Kalinowski, K., Allen, M. S. & Williamson, P. C., 24 Jun 2013, In : PLoS ONE. 8, 6, e67129.

Research output: Contribution to journalArticle

semiconductors
Amblyomma americanum
Nymph
Semiconductors
Microbiota
2012
32 Citations (Scopus)

Complete genome sequence of Thauera aminoaromatica strain MZ1T

Jiang, K., Sanseverino, J., Chauhan, A., Lucas, S., Copeland, A., Lapidus, A., Del Rio, T. G., Dalin, E., Tice, H., Bruce, D., Goodwin, L., Pitluck, S., Sims, D., Brettin, T., Detter, J. C., Han, C., Chang, Y. J., Larimer, F., Land, M., Hauser, L. & 10 others, Kyrpides, N. C., Mikhailova, N., Moser, S., Jegier, P., Close, D., DeBruyn, J. M., Wang, Y., Layton, A. C., Allen, M. S. & Sayler, G. S., 27 Aug 2012, In : Standards in Genomic Sciences. 6, 3, p. 325-335 11 p.

Research output: Contribution to journalArticle

Thauera
Genome
Rhodocyclaceae
Betaproteobacteria
Methane
2008
40 Citations (Scopus)

Using noise to probe and characterize gene circuits

Cox, C. D., McCollum, J. M., Allen, M. S., Dar, R. D. & Simpson, M. L., 5 Aug 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 31, p. 10809-10814 6 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Noise
Population
2007
19 Citations (Scopus)

A destabilized bacterial luciferase for dynamic gene expression studies

Allen, M. S., Wilgus, J. R., Chewning, C. S., Sayler, G. S. & Simpson, M. L., 1 Mar 2007, In : Systems and Synthetic Biology. 1, 1, p. 3-9 7 p.

Research output: Contribution to journalArticle

Bacterial Luciferases
Gene expression
Half-Life
Genes
Synthetic Genes
14 Citations (Scopus)

Direct quantification of N-(3-oxo-hexanoyl)-l-homoserine lactone in culture supernatant using a whole-cell bioreporter

Yan, L., Allen, M. S., Simpson, M. L., Sayler, G. S. & Cox, C. D., 1 Jan 2007, In : Journal of Microbiological Methods. 68, 1, p. 40-45 6 p.

Research output: Contribution to journalArticle

Aliivibrio fischeri
Luminescent Proteins
Quorum Sensing
Operon
Transcriptional Activation
2006
31 Citations (Scopus)

Frequency domain analysis of noise in simple gene circuits

Cox, C. D., McCollum, J. M., Austin, D. W., Allen, M. S., Dar, R. D. & Simpson, M. L., 1 Jan 2006, In : Chaos. 16, 2, 026102.

Research output: Contribution to journalArticle

frequency domain analysis
Frequency Domain Analysis
Frequency domain analysis
genes
Genes
206 Citations (Scopus)

Gene network shaping of inherent noise spectra

Austin, D. W., Allen, M. S., McCollum, J. M., Dar, R. D., Wilgus, J. R., Sayler, G. S., Samatova, N. F., Cox, C. D. & Simpson, M. L., 2 Feb 2006, In : Nature. 439, 7076, p. 608-611 4 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Noise
Homeostasis
Genes
Escherichia coli
2005
3 Citations (Scopus)

Molecular characterization of autoinduction of bioluminescence in the Microtox® indicator strain Vibrio fischeri ATCC 49387

Perry, L. L., Bright, N. G., Carroll, R. J., Scott, M. C., Allen, M. S. & Applegate, B. M., 1 Jul 2005, In : Canadian Journal of Microbiology. 51, 7, p. 549-557 9 p.

Research output: Contribution to journalArticle

Aliivibrio fischeri
Clone Cells
Conditioned Culture Medium
Acyl-Butyrolactones
Glutamine
2004
56 Citations (Scopus)

Analysis and glycosyl composition of the exopolysaccharide isolated from the floc-forming wastewater bacterium Thauera sp. MZ1T

Allen, M. S., Welch, K. T., Prebyl, B. S., Baker, D. C., Meyers, A. J. & Sayler, G. S., 1 Aug 2004, In : Environmental Microbiology. 6, 8, p. 780-790 11 p.

Research output: Contribution to journalArticle

Thauera
exopolysaccharides
Waste Water
polysaccharide
Polysaccharides
2003
32 Citations (Scopus)

Analysis of Noise in Quorum Sensing

Cox, C. D., Peterson, G. D., Allen, M. S., Lancaster, J. M., McCollum, J. M., Austin, D., Yan, L., Sayler, G. S. & Simpson, M. L., 1 Jan 2003, In : OMICS A Journal of Integrative Biology. 7, 3, p. 317-334 18 p.

Research output: Contribution to journalArticle

Quorum Sensing
Noise
Networks (circuits)
Gene Regulatory Networks
Genes