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Research Output 2003 2019

  • 602 Citations
  • 13 h-Index
  • 27 Article
  • 1 Chapter
  • 1 Conference contribution
  • 1 Review article
19 Citations (Scopus)

A destabilized bacterial luciferase for dynamic gene expression studies

Allen, M. S., Wilgus, J. R., Chewning, C. S., Sayler, G. S. & Simpson, M. L., 1 Mar 2007, In : Systems and Synthetic Biology. 1, 1, p. 3-9 7 p.

Research output: Contribution to journalArticle

Bacterial Luciferases
Gene expression
Half-Life
Genes
Synthetic Genes
13 Citations (Scopus)

Alterations to the Intestinal Microbiome and Metabolome of Pimephales promelas and Mus musculus Following Exposure to Dietary Methylmercury

Bridges, K. N., Zhang, Y., Curran, T. E., Magnuson, J. T., Venables, B. J., Durrer, K. E., Allen, M. S. & Roberts, A. P., 7 Aug 2018, In : Environmental Science and Technology. 52, 15, p. 8774-8784 11 p.

Research output: Contribution to journalArticle

methylmercury
Fish
Neurodegenerative diseases
teleost
Hatches
56 Citations (Scopus)

Analysis and glycosyl composition of the exopolysaccharide isolated from the floc-forming wastewater bacterium Thauera sp. MZ1T

Allen, M. S., Welch, K. T., Prebyl, B. S., Baker, D. C., Meyers, A. J. & Sayler, G. S., 1 Aug 2004, In : Environmental Microbiology. 6, 8, p. 780-790 11 p.

Research output: Contribution to journalArticle

Thauera
exopolysaccharides
Waste Water
polysaccharide
Polysaccharides
32 Citations (Scopus)

Analysis of Noise in Quorum Sensing

Cox, C. D., Peterson, G. D., Allen, M. S., Lancaster, J. M., McCollum, J. M., Austin, D., Yan, L., Sayler, G. S. & Simpson, M. L., 1 Jan 2003, In : OMICS A Journal of Integrative Biology. 7, 3, p. 317-334 18 p.

Research output: Contribution to journalArticle

Quorum Sensing
Noise
Networks (circuits)
Gene Regulatory Networks
Genes

Bacterial microbiomes of Ixodes scapularis ticks collected from Massachusetts and Texas, USA

Thapa, S., Zhang, Y. & Allen, M. S., 24 Jun 2019, In : BMC Microbiology. 19, 1, 138.

Research output: Contribution to journalArticle

Open Access
Ixodes
Microbiota
Ticks
Rickettsia
Geography

Bio-composites of Sesbania herbacea plant fibers/polyvinyl alcohol (PVA): Effect of chemical retting

Vidhate, S., Stevens, K., Ayre, B., Allen, M. & D'Souza, N., 22 Aug 2011, 69th Annual Technical Conference of the Society of Plastics Engineers 2011, ANTEC 2011. p. 188-192 5 p. (Annual Technical Conference - ANTEC, Conference Proceedings; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Polyvinyl Alcohol
Polyvinyl alcohols
Fibers
Composite materials
Sodium Hydroxide
1 Citation (Scopus)

Common lung microbiome identified among mechanically ventilated surgical patients

Smith, A. D., Zhang, Y., Barber, R. C., Minshall, C. T., Huebinger, R. M. & Allen, M. S., Nov 2016, In : PLoS ONE. 11, 11, e0166313.

Research output: Contribution to journalArticle

Microbiota
Bacteria
lungs
Bronchoalveolar Lavage
Lung
32 Citations (Scopus)

Complete genome sequence of Thauera aminoaromatica strain MZ1T

Jiang, K., Sanseverino, J., Chauhan, A., Lucas, S., Copeland, A., Lapidus, A., Del Rio, T. G., Dalin, E., Tice, H., Bruce, D., Goodwin, L., Pitluck, S., Sims, D., Brettin, T., Detter, J. C., Han, C., Chang, Y. J., Larimer, F., Land, M., Hauser, L. & 10 others, Kyrpides, N. C., Mikhailova, N., Moser, S., Jegier, P., Close, D., DeBruyn, J. M., Wang, Y., Layton, A. C., Allen, M. S. & Sayler, G. S., 27 Aug 2012, In : Standards in Genomic Sciences. 6, 3, p. 325-335 11 p.

Research output: Contribution to journalArticle

Thauera
Genome
Rhodocyclaceae
Betaproteobacteria
Methane
14 Citations (Scopus)

Direct quantification of N-(3-oxo-hexanoyl)-l-homoserine lactone in culture supernatant using a whole-cell bioreporter

Yan, L., Allen, M. S., Simpson, M. L., Sayler, G. S. & Cox, C. D., 1 Jan 2007, In : Journal of Microbiological Methods. 68, 1, p. 40-45 6 p.

Research output: Contribution to journalArticle

Aliivibrio fischeri
Luminescent Proteins
Quorum Sensing
Operon
Transcriptional Activation
12 Citations (Scopus)

Effects of chemical versus enzymatic processing of kenaf fibers on poly(hydroxybutyrate-co-valerate)/poly(butylene adipate-co-terephthalate) composite properties

Yang, B., Nar, M., Visi, D. K., Allen, M. S., Ayre, B., Webber, C. L., Lu, H. & D'Souza, N. A., 1 Jan 2014, In : Composites Part B: Engineering. 56, p. 926-933 8 p.

Research output: Contribution to journalArticle

Kenaf fibers
Hydroxybutyrates
Valerates
Polygalacturonase
Fibers
3 Citations (Scopus)

Effects of temperature on bacterial microbiome composition in Ixodes scapularis ticks

Thapa, S., Zhang, Y. & Allen, M. S., May 2019, In : MicrobiologyOpen. 8, 5, e00719.

Research output: Contribution to journalArticle

Ixodes
Microbiota
Ticks
Temperature
Rickettsia
5 Citations (Scopus)
Thauera
Flocculation
exopolysaccharides
flocculation
mutation
13 Citations (Scopus)

Frequency and distribution of rickettsiae, borreliae, and ehrlichiae detected in human-parasitizing ticks, Texas, USA

Mitchell, E. A., Williamson, P. C., Billingsley, P. M., Seals, J. P., Ferguson, E. E. & Allen, M. S., Feb 2016, In : Emerging Infectious Diseases. 22, 2, p. 312-315 4 p.

Research output: Contribution to journalArticle

Ehrlichia
Borrelia
Rickettsia
Ticks
Bacterial DNA
31 Citations (Scopus)

Frequency domain analysis of noise in simple gene circuits

Cox, C. D., McCollum, J. M., Austin, D. W., Allen, M. S., Dar, R. D. & Simpson, M. L., 1 Jan 2006, In : Chaos. 16, 2, 026102.

Research output: Contribution to journalArticle

frequency domain analysis
Frequency Domain Analysis
Frequency domain analysis
genes
Genes
207 Citations (Scopus)

Gene network shaping of inherent noise spectra

Austin, D. W., Allen, M. S., McCollum, J. M., Dar, R. D., Wilgus, J. R., Sayler, G. S., Samatova, N. F., Cox, C. D. & Simpson, M. L., 2 Feb 2006, In : Nature. 439, 7076, p. 608-611 4 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Noise
Homeostasis
Genes
Escherichia coli
13 Citations (Scopus)

Genetically engineered probiotic for the treatment of phenylketonuria (PKU); Assessment of a novel treatment in vitro and in the PAHenu2 mouse model of PKU

Durrer, K. E., Allen, M. S. & Von Herbing, I. H., May 2017, In : PLoS ONE. 12, 5, e0176286.

Research output: Contribution to journalArticle

phenylketonuria
Phenylketonurias
Probiotics
Phenylalanine
probiotics
3 Citations (Scopus)

Genome sequence of a Proteus mirabilis strain isolated from the salivary glands of larval Lucilia sericata

Yuan, Y., Zhang, Y., Fu, S., Crippen, T. L., Visi, D. K., Benbow, M. E., Allen, M. S., Tomberlin, J. K., Sze, S. H. & Tarone, A. M., 1 Jan 2016, In : Genome Announcements. 4, 4, e00672-16.

Research output: Contribution to journalArticle

Proteus mirabilis
Salivary Glands
Genome
Oviposition
Forensic Medicine
1 Citation (Scopus)

Genome sequence of a Providencia stuartii strain isolated from Lucilia sericata salivary glands

Yuan, Y., Zhang, Y., Fu, S., Crippen, T. L., Visi, D. K., Eric Benbow, M., Allen, M. S., Tomberlin, J. K., Sze, S. H. & Tarone, A. M., 1 Jan 2017, In : Genome Announcements. 5, 17, e00250-17.

Research output: Contribution to journalArticle

Providencia
Salivary Glands
Diptera
Genome
Proteus mirabilis

Immunological responses to the relapsing fever spirochete borrelia turicatae in infected rhesus macaques: Implications for pathogenesis and diagnosis

Embers, M. E., Krishnavajhala, A., Armstrong, B. A., Curtis, M. W., Pahar, B., Wilder, H. K., Allen, M. S., Beare, P. A., Hasenkampf, N. R. & Lopez, J. E., 1 Apr 2019, In : Infection and Immunity. 87, 4, e00900.

Research output: Contribution to journalArticle

Relapsing Fever
Borrelia
Spirochaetales
Macaca mulatta
Primates
8 Citations (Scopus)

Investigation of the bacterial retting community of kenaf (Hibiscus cannabinus) under different conditions using next-generation semiconductor sequencing

Visi, D. K., D'Souza, N., Ayre, B. G., Webber, C. L. & Allen, M. S., 1 May 2013, In : Journal of Industrial Microbiology and Biotechnology. 40, 5, p. 465-475 11 p.

Research output: Contribution to journalArticle

Hibiscus
Semiconductors
Ponds
Bacteria
Plant DNA
2 Citations (Scopus)

Microbial genetics and systematics

Allen, M. S. & Lamontagne, M. G., 1 Jan 2015, Carrion Ecology, Evolution, and Their Applications. CRC Press, p. 403-419 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microbial Genetics
Microbial Interactions
microbial genetics
Microbiota
Ecosystem
3 Citations (Scopus)

Molecular characterization of autoinduction of bioluminescence in the Microtox® indicator strain Vibrio fischeri ATCC 49387

Perry, L. L., Bright, N. G., Carroll, R. J., Scott, M. C., Allen, M. S. & Applegate, B. M., 1 Jul 2005, In : Canadian Journal of Microbiology. 51, 7, p. 549-557 9 p.

Research output: Contribution to journalArticle

Aliivibrio fischeri
Clone Cells
Conditioned Culture Medium
Acyl-Butyrolactones
Glutamine
38 Citations (Scopus)

Noise in biological circuits

Simpson, M. L., Cox, C. D., Allen, M. S., Mccollum, J. M., Dar, R. D., Karig, D. K. & Cooke, J. F., 1 Dec 2009, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 1, 2, p. 214-225 12 p.

Research output: Contribution to journalReview article

Noise
Networks (circuits)
Genes
Medical nanotechnology
Flow cytometry
5 Citations (Scopus)

Phylogenetic relationship of serovar C-1 isolates of avibacterium paragallinarum

García-Sánchez, A., Morales-Erasto, V., Talavera-Rojas, M., Robles-González, F., Allen, M. S., Blackall, P. J. & Soriano-Vargas, E., 1 Jan 2014, In : Avian Diseases. 58, 1, p. 143-146 4 p.

Research output: Contribution to journalArticle

Avibacterium paragallinarum
serotypes
phylogeny
16S Ribosomal RNA
Ecuador
39 Citations (Scopus)

Preliminary Assessment of Microbiome Changes Following Blood-Feeding and Survivorship in the Amblyomma americanum Nymph-to-Adult Transition using Semiconductor Sequencing

Menchaca, A. C., Visi, D. K., Strey, O. F., Teel, P. D., Kalinowski, K., Allen, M. S. & Williamson, P. C., 24 Jun 2013, In : PLoS ONE. 8, 6, e67129.

Research output: Contribution to journalArticle

semiconductors
Amblyomma americanum
Nymph
Semiconductors
Microbiota
1 Citation (Scopus)

Rhodopseudomonas palustris CGA010 proteome implicates extracytoplasmic function sigma factor in stress response

Allen, M. S., Hurst, G. B., Lu, T. Y. S., Perry, L. M., Pan, C., Lankford, P. K. & Pelletier, D. A., 1 May 2015, In : Journal of Proteome Research. 14, 5, p. 2158-2168 11 p.

Research output: Contribution to journalArticle

Rhodopseudomonas
Sigma Factor
Proteome
Genes
Proteins
5 Citations (Scopus)

Spatial Microbial Composition Along the Gastrointestinal Tract of Captive Attwater’s Prairie Chicken

Zhang, Y., Simon, S. E., Johnson, J. A. & Allen, M. S., 1 May 2017, In : Microbial Ecology. 73, 4, p. 966-977 12 p.

Research output: Contribution to journalArticle

prairie
gastrointestinal system
cloaca
microorganisms
sampling
40 Citations (Scopus)

Using noise to probe and characterize gene circuits

Cox, C. D., McCollum, J. M., Allen, M. S., Dar, R. D. & Simpson, M. L., 5 Aug 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 31, p. 10809-10814 6 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Noise
Population
5 Citations (Scopus)

Validation of droplet digital PCR for the detection and absolute quantification of Borrelia DNA in Ixodes scapularis ticks

King, J. L., Smith, A. D., Mitchell, E. A. & Allen, M. S., 1 Apr 2017, In : Parasitology. 144, 4, p. 359-367 9 p.

Research output: Contribution to journalArticle

Borrelia
Ixodes
Spirochaetales
Ixodes scapularis
Ticks
1 Citation (Scopus)

Variations of the lung microbiome and immune response in mechanically ventilated surgical patients

Huebinger, R. M., Smith, A. D., Zhang, Y., Monson, N. L., Ireland, S. J., Barber, R. C., Kubasiak, J. C., Minshall, C. T., Minei, J. P., Wolf, S. E. & Allen, M. S., Oct 2018, In : PLoS ONE. 13, 10, e0205788.

Research output: Contribution to journalArticle

Microbiota
Respiratory System
lungs
immune response
Cytokines