• 691 Citations
  • 14 h-Index
20032020

Research output per year

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Research Output

  • 691 Citations
  • 14 h-Index
  • 30 Article
  • 1 Chapter
  • 1 Conference contribution
  • 1 Review article
2020

Comparative analysis of racial differences in breast tumor microbiome

Thyagarajan, S., Zhang, Y., Thapa, S., Allen, M. S., Phillips, N., Chaudhary, P., Kashyap, M. V. & Vishwanatha, J. K., 1 Dec 2020, In : Scientific Reports. 10, 1, 14116.

Research output: Contribution to journalArticle

Open Access

Comparison of the Bacterial Gut Microbiome of North American Triatoma spp. With and Without Trypanosoma cruzi

Mann, A. E., Mitchell, E. A., Zhang, Y., Curtis-Robles, R., Thapa, S., Hamer, S. A. & Allen, M. S., 13 Mar 2020, In : Frontiers in Microbiology. 11, 364.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Effects of inhaled air pollution on markers of integrity, inflammation, and microbiota profiles of the intestines in Apolipoprotein E knockout mice

Fitch, M. N., Phillippi, D., Zhang, Y., Lucero, J. A., Pandey, R. S., Liu, J., Brower, J., Allen, M. S., Campen, M. J., McDonald, J. D. & Lund, A. K., Feb 2020, In : Environmental Research. 181, 108913.

Research output: Contribution to journalArticle

4 Scopus citations
2019

Bacterial microbiomes of Ixodes scapularis ticks collected from Massachusetts and Texas, USA

Thapa, S., Zhang, Y. & Allen, M. S., 24 Jun 2019, In : BMC Microbiology. 19, 1, 138.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Effects of temperature on bacterial microbiome composition in Ixodes scapularis ticks

Thapa, S., Zhang, Y. & Allen, M. S., May 2019, In : MicrobiologyOpen. 8, 5, e00719.

Research output: Contribution to journalArticle

12 Scopus citations

Immunological responses to the relapsing fever spirochete borrelia turicatae in infected rhesus macaques: Implications for pathogenesis and diagnosis

Embers, M. E., Krishnavajhala, A., Armstrong, B. A., Curtis, M. W., Pahar, B., Wilder, H. K., Allen, M. S., Beare, P. A., Hasenkampf, N. R. & Lopez, J. E., 1 Apr 2019, In : Infection and Immunity. 87, 4, e00900.

Research output: Contribution to journalArticle

1 Scopus citations
2018

Alterations to the Intestinal Microbiome and Metabolome of Pimephales promelas and Mus musculus Following Exposure to Dietary Methylmercury

Bridges, K. N., Zhang, Y., Curran, T. E., Magnuson, J. T., Venables, B. J., Durrer, K. E., Allen, M. S. & Roberts, A. P., 7 Aug 2018, In : Environmental Science and Technology. 52, 15, p. 8774-8784 11 p.

Research output: Contribution to journalArticle

20 Scopus citations

Variations of the lung microbiome and immune response in mechanically ventilated surgical patients

Huebinger, R. M., Smith, A. D., Zhang, Y., Monson, N. L., Ireland, S. J., Barber, R. C., Kubasiak, J. C., Minshall, C. T., Minei, J. P., Wolf, S. E. & Allen, M. S., Oct 2018, In : PLoS ONE. 13, 10, e0205788.

Research output: Contribution to journalArticle

2 Scopus citations
2017

Genetically engineered probiotic for the treatment of phenylketonuria (PKU); Assessment of a novel treatment in vitro and in the PAHenu2 mouse model of PKU

Durrer, K. E., Allen, M. S. & Von Herbing, I. H., May 2017, In : PLoS ONE. 12, 5, e0176286.

Research output: Contribution to journalArticle

16 Scopus citations

Genome sequence of a Providencia stuartii strain isolated from Lucilia sericata salivary glands

Yuan, Y., Zhang, Y., Fu, S., Crippen, T. L., Visi, D. K., Eric Benbow, M., Allen, M. S., Tomberlin, J. K., Sze, S. H. & Tarone, A. M., 2017, In : Genome Announcements. 5, 17, e00250-17.

Research output: Contribution to journalArticle

2 Scopus citations

Spatial Microbial Composition Along the Gastrointestinal Tract of Captive Attwater’s Prairie Chicken

Zhang, Y., Simon, S. E., Johnson, J. A. & Allen, M. S., 1 May 2017, In : Microbial Ecology. 73, 4, p. 966-977 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Validation of droplet digital PCR for the detection and absolute quantification of Borrelia DNA in Ixodes scapularis ticks

King, J. L., Smith, A. D., Mitchell, E. A. & Allen, M. S., 1 Apr 2017, In : Parasitology. 144, 4, p. 359-367 9 p.

Research output: Contribution to journalArticle

7 Scopus citations
2016

Common lung microbiome identified among mechanically ventilated surgical patients

Smith, A. D., Zhang, Y., Barber, R. C., Minshall, C. T., Huebinger, R. M. & Allen, M. S., Nov 2016, In : PLoS ONE. 11, 11, e0166313.

Research output: Contribution to journalArticle

1 Scopus citations
6 Scopus citations

Frequency and distribution of rickettsiae, borreliae, and ehrlichiae detected in human-parasitizing ticks, Texas, USA

Mitchell, E. A., Williamson, P. C., Billingsley, P. M., Seals, J. P., Ferguson, E. E. & Allen, M. S., Feb 2016, In : Emerging Infectious Diseases. 22, 2, p. 312-315 4 p.

Research output: Contribution to journalArticle

15 Scopus citations

Genome sequence of a Proteus mirabilis strain isolated from the salivary glands of larval Lucilia sericata

Yuan, Y., Zhang, Y., Fu, S., Crippen, T. L., Visi, D. K., Benbow, M. E., Allen, M. S., Tomberlin, J. K., Sze, S. H. & Tarone, A. M., 2016, In : Genome Announcements. 4, 4, e00672-16.

Research output: Contribution to journalArticle

3 Scopus citations
2015

Microbial genetics and systematics

Allen, M. S. & Lamontagne, M. G., 1 Jan 2015, Carrion Ecology, Evolution, and Their Applications. CRC Press, p. 403-419 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Scopus citations

Rhodopseudomonas palustris CGA010 proteome implicates extracytoplasmic function sigma factor in stress response

Allen, M. S., Hurst, G. B., Lu, T. Y. S., Perry, L. M., Pan, C., Lankford, P. K. & Pelletier, D. A., 1 May 2015, In : Journal of Proteome Research. 14, 5, p. 2158-2168 11 p.

Research output: Contribution to journalArticle

2 Scopus citations
2014

Effects of chemical versus enzymatic processing of kenaf fibers on poly(hydroxybutyrate-co-valerate)/poly(butylene adipate-co-terephthalate) composite properties

Yang, B., Nar, M., Visi, D. K., Allen, M., Ayre, B., Webber, C. L., Lu, H. & D'Souza, N. A., 2014, In : Composites Part B: Engineering. 56, p. 926-933 8 p.

Research output: Contribution to journalArticle

15 Scopus citations

Phylogenetic relationship of serovar C-1 isolates of avibacterium paragallinarum

García-Sánchez, A., Morales-Erasto, V., Talavera-Rojas, M., Robles-González, F., Allen, M. S., Blackall, P. J. & Soriano-Vargas, E., Mar 2014, In : Avian Diseases. 58, 1, p. 143-146 4 p.

Research output: Contribution to journalArticle

7 Scopus citations
2013

Investigation of the bacterial retting community of kenaf (Hibiscus cannabinus) under different conditions using next-generation semiconductor sequencing

Visi, D. K., D'Souza, N., Ayre, B. G., Webber, C. L. & Allen, M. S., 1 May 2013, In : Journal of Industrial Microbiology and Biotechnology. 40, 5, p. 465-475 11 p.

Research output: Contribution to journalArticle

10 Scopus citations

Preliminary Assessment of Microbiome Changes Following Blood-Feeding and Survivorship in the Amblyomma americanum Nymph-to-Adult Transition using Semiconductor Sequencing

Menchaca, A. C., Visi, D. K., Strey, O. F., Teel, P. D., Kalinowski, K., Allen, M. S. & Williamson, P. C., 24 Jun 2013, In : PLoS ONE. 8, 6, e67129.

Research output: Contribution to journalArticle

43 Scopus citations
2012

Complete genome sequence of Thauera aminoaromatica strain MZ1T

Jiang, K., Sanseverino, J., Chauhan, A., Lucas, S., Copeland, A., Lapidus, A., Del Rio, T. G., Dalin, E., Tice, H., Bruce, D., Goodwin, L., Pitluck, S., Sims, D., Brettin, T., Detter, J. C., Han, C., Chang, Y. J., Larimer, F., Land, M., Hauser, L. & 10 others, Kyrpides, N. C., Mikhailova, N., Moser, S., Jegier, P., Close, D., DeBruyn, J. M., Wang, Y., Layton, A. C., Allen, M. S. & Sayler, G. S., 2012, In : Standards in Genomic Sciences. 6, 3, p. 325-335 11 p.

Research output: Contribution to journalArticle

40 Scopus citations
2011

Bio-composites of Sesbania herbacea plant fibers/polyvinyl alcohol (PVA): Effect of chemical retting

Vidhate, S., Stevens, K., Ayre, B., Allen, M. & D'Souza, N., 22 Aug 2011, 69th Annual Technical Conference of the Society of Plastics Engineers 2011, ANTEC 2011. p. 188-192 5 p. (Annual Technical Conference - ANTEC, Conference Proceedings; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009

Noise in biological circuits

Simpson, M. L., Cox, C. D., Allen, M. S., Mccollum, J. M., Dar, R. D., Karig, D. K. & Cooke, J. F., 1 Dec 2009, In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 1, 2, p. 214-225 12 p.

Research output: Contribution to journalReview article

41 Scopus citations
2008

Using noise to probe and characterize gene circuits

Cox, C. D., McCollum, J. M., Allen, M. S., Dar, R. D. & Simpson, M. L., 5 Aug 2008, In : Proceedings of the National Academy of Sciences of the United States of America. 105, 31, p. 10809-10814 6 p.

Research output: Contribution to journalArticle

42 Scopus citations
2007

A destabilized bacterial luciferase for dynamic gene expression studies

Allen, M. S., Wilgus, J. R., Chewning, C. S., Sayler, G. S. & Simpson, M. L., Mar 2007, In : Systems and Synthetic Biology. 1, 1, p. 3-9 7 p.

Research output: Contribution to journalArticle

19 Scopus citations

Direct quantification of N-(3-oxo-hexanoyl)-l-homoserine lactone in culture supernatant using a whole-cell bioreporter

Yan, L., Allen, M. S., Simpson, M. L., Sayler, G. S. & Cox, C. D., 1 Jan 2007, In : Journal of Microbiological Methods. 68, 1, p. 40-45 6 p.

Research output: Contribution to journalArticle

16 Scopus citations
2006

Frequency domain analysis of noise in simple gene circuits

Cox, C. D., McCollum, J. M., Austin, D. W., Allen, M. S., Dar, R. D. & Simpson, M. L., 1 Jan 2006, In : Chaos. 16, 2, 026102.

Research output: Contribution to journalArticle

32 Scopus citations

Gene network shaping of inherent noise spectra

Austin, D. W., Allen, M. S., McCollum, J. M., Dar, R. D., Wilgus, J. R., Sayler, G. S., Samatova, N. F., Cox, C. D. & Simpson, M. L., 2 Feb 2006, In : Nature. 439, 7076, p. 608-611 4 p.

Research output: Contribution to journalArticle

212 Scopus citations
2005

Molecular characterization of autoinduction of bioluminescence in the Microtox® indicator strain Vibrio fischeri ATCC 49387

Perry, L. L., Bright, N. G., Carroll, R. J., Scott, M. C., Allen, M. S. & Applegate, B. M., 1 Jul 2005, In : Canadian Journal of Microbiology. 51, 7, p. 549-557 9 p.

Research output: Contribution to journalArticle

3 Scopus citations
2004

Analysis and glycosyl composition of the exopolysaccharide isolated from the floc-forming wastewater bacterium Thauera sp. MZ1T

Allen, M. S., Welch, K. T., Prebyl, B. S., Baker, D. C., Meyers, A. J. & Sayler, G. S., 1 Aug 2004, In : Environmental Microbiology. 6, 8, p. 780-790 11 p.

Research output: Contribution to journalArticle

66 Scopus citations
2003

Analysis of Noise in Quorum Sensing

Cox, C. D., Peterson, G. D., Allen, M. S., Lancaster, J. M., McCollum, J. M., Austin, D., Yan, L., Sayler, G. S. & Simpson, M. L., 1 Jan 2003, In : OMICS A Journal of Integrative Biology. 7, 3, p. 317-334 18 p.

Research output: Contribution to journalArticle

34 Scopus citations