Microbiology, Immunology & Genetics

Research output

Research output per year 1974 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025

• 75204 Citations
• 114 h-index
• 1526 Article
• 102 Review article
• 46 Chapter
• 29 Conference contribution
• 95 More
  • 26 Comment/debate
  • 23 Letter
  • 19 Conference article
  • 11 Editorial
  • 6 Meeting Abstract
  • 6 Short survey
  • 3 Entry for encyclopedia/dictionary
  • 1 Paper

Research output per year

Research output per year

Search results

• Determining lineages between individuals with high-density mitochondrial and Y-chromosomal single-nucleotide polymorphisms

  Chiao, A. & Ge, J., May 2024, In: Electrophoresis. 45, 9-10, p. 843-851 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Single nucleotide Polymorphism 100%
  • Lineage Markers 100%
  • High Density 100%
  • Between-person 100%
  • Y-chromosomal 100%

• Approaches to Whole Mitochondrial Genome Sequencing on the Oxford Nanopore MinION

  Zascavage, R. R., Hall, C. L., Thorson, K., Mahmoud, M., Sedlazeck, F. J. & Planz, J. V., 1 Dec 2019, In: Current Protocols in Human Genetics. 104, 1, e94.

  Research output: Contribution to journal › Article › peer-review

  • Mitochondrial DNA 100%
  • Mitochondrial Sequences 100%
  • Oxford Nanopore 100%
  • Complete Mitochondrial Genome 100%
  • Mitochondrial Genome 100%

• Decreasing photobleaching by silver nanoparticles on metal surfaces: Application to muscle myofibrils

  Muthu, P., Gryczynski, I., Gryczynski, Z., Talent, J. M., Akopova, I. & Borejdo, J., 2008, In: Journal of Biomedical Optics. 13, 1, 014023.

  Research output: Contribution to journal › Article › peer-review

  • Myofibril 100%
  • Silver Nanoparticles 100%
  • Photobleaching 100%
  • Metal Surface 100%
  • Surface Application 100%

• Evaluating population histories in Patagonia and Tierra del Fuego, Chile, using ancient mitochondrial and Y-chromosomal DNA

  Balentine, C. M., Alfonso-Durruty, M., Reynolds, A., Vilar, M., Morello, F., San Roman, M., Springs, L. C., Smith, R. W. A., Archer, S., Mata-Miguez, J., Wing, N. & Bolnick, D. A., Jan 2023, In: American Journal of Biological Anthropology. 180, 1, p. 144-161

  Research output: Contribution to journal › Article › peer-review

• HIV-1 tat induces unfolded protein response and endoplasmic reticulum stress in astrocytes and causes neurotoxicity through glial fibrillary acidic protein (GFAP) activation and aggregation

  Fan, Y. & He, J. J., 21 Oct 2016, In: Journal of Biological Chemistry. 291, 43, p. 22819-22829 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Endoplasmic Reticulum Stress (ER stress) 100%
  • Astrocytes 100%
  • Protein Activation 100%
  • HIV-1 Tat 100%
  • Neurotoxicity 100%

• Single nucleotide polymorphism typing with massively parallel sequencing for human identification

  Seo, S. B., King, J. L., Warshauer, D. H., Davis, C. P., Ge, J. & Budowle, B., Nov 2013, In: International journal of legal medicine. 127, 6, p. 1079-1086 8 p.

  Research output: Contribution to journal › Article › peer-review

  • SNP 100%
  • Massively Parallel Sequencing 100%
  • Single nucleotide Polymorphism 100%
  • Human Identification 100%
  • Single Nucleotide Polymorphism 100%

• Perinatal chronic hypoxia induces cortical inflammation, hypomyelination, and peripheral myelin-specific t cell autoreactivity

  Ortega, S. B., Kong, X., Venkataraman, R., Savedra, A. M., Kernie, S. G., Stowe, A. M. & Raman, L., Jan 2016, In: Journal of Leukocyte Biology. 99, 1, p. 21-29 9 p.

  Research output: Contribution to journal › Article › peer-review

  • T Cells 100%
  • Myelin 100%
  • Autoreactivity 100%
  • Cortical Inflammation 100%
  • Hypomyelination 100%

• Nanoparticle-mediated catalase delivery protects human neurons from oxidative stress

  Singhal, A., Morris, V. B., Labhasetwar, V. & Ghorpade, A., Nov 2013, In: Cell Death and Disease. 4, 11, e903.

  Research output: Contribution to journal › Article › peer-review

  • Oxidative Stress 100%
  • Catalase 100%
  • Nanoparticles 100%
  • Human Neurons 100%
  • Nanoparticle 100%

• A standalone humanitarian DNA identification database system to increase identification of human remains of foreign nationals

  Budowle, B., Bus, M. M., Josserand, M. A. & Peters, D. L., 1 Nov 2020, In: International journal of legal medicine. 134, 6, p. 2039-2044 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Human Remains Identification 100%
  • DNA Identification 100%
  • DNA Database 100%
  • Foreign Nationals 100%
  • Humanitarian 100%

• Identification of GXXXXG Motif in Chrysophsin-1 and Its Implication in the Design of Analogs with Cell-Selective Antimicrobial and Anti-Endotoxin Activities

  Tripathi, A., Kumari, T., Harioudh, M., Yadav, P., Shukla, P. K. & Ghosh, J. K., 2017, In: Scientific Reports. 3384.

  Research output: Contribution to journal › Article › peer-review

  • Antiinfective Agent 100%
  • Lipopolysaccharide 100%
  • Proline 100%
  • Endotoxin 100%
  • Selective Antimicrobials 100%

• Shaping the Future of Antimicrobial Therapy: Harnessing the Power of Antimicrobial Peptides in Biomedical Applications

  Tripathi, A., Singh, J., Trivedi, R. & Ranade, P., 2023, In: Journal of Functional Biomaterials. 14, 11

  Research output: Contribution to journal › Article › peer-review

  • Polypeptide Antibiotic Agent 100%
  • Antimicrobial Therapy 100%
  • Shaping the Future 100%
  • Antimicrobial Peptide 100%
  • Implant 66%

• Ubiquitin regulates TORC1 in yeast Saccharomyces cerevisiae

  Hu, K., Guo, S., Yan, G., Yuan, W., Zheng, Y. & Jiang, Y., 1 Apr 2016, In: Molecular Microbiology. 100, 2, p. 303-314 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Mammalian Target of Rapamycin (mTOR) 100%
  • Ubiquitin 100%
  • Saccharomyces Cerevisiae 100%
  • Mammalian Target of Rapamycin Complex 1 100%
  • Saccharomyces cerevisiae 100%

• Elimination of autofluorescence background from fluorescence tissue images by use of time-gated detection and the AzaDiOxaTriAngulenium (ADOTA) fluorophore

  Rich, R. M., Stankowska, D. L., Maliwal, B. P., Sørensen, T. J., Laursen, B. W., Krishnamoorthy, R. R., Gryczynski, Z., Borejdo, J., Gryczynski, I. & Fudala, R., Feb 2013, In: Analytical and bioanalytical chemistry. 405, 6, p. 2065-2075 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Fluorophore 100%
  • Time Use 100%
  • Autofluorescence 100%
  • Time-gated Detection 100%
  • Tissue Imaging 100%

• Aging induced decline in T-lymphopoiesis is primarily dependent on status of progenitor niches in the bone marrow and thymus

  Sun, L., Brown, R., Chen, S., Zhuge, Q. & Su, D. M., 2012, In: Aging. 4, 9, p. 606-619 14 p.

  Research output: Contribution to journal › Article › peer-review

  • Thymus 100%
  • Aging 100%
  • Lymphohaematopoietic 100%
  • Hematopoietic Stem Cells 100%
  • Bone Marrow 100%

• Timing and Dose Regimens of Marrow Mesenchymal Stem Cell Transplantation Affect the Outcomes and Neuroinflammatory Response After Ischemic Stroke

  Wang, L. Q., Lin, Z. Z., Zhang, H. X., Shao, B., Xiao, L., Jiang, H. G., Zhuge, Q. C., Xie, L. K., Wang, B., Su, D. M. & Jin, K. L., Apr 2014, In: CNS Neuroscience and Therapeutics. 20, 4, p. 317-326 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Transplantation 100%
  • Ischemic Stroke 100%
  • Ischemic Brain 100%
  • Human Mesenchymal Stem Cells (hMSCs) 100%
  • Marrow Mesenchymal Stem Cells 100%

• Natural Killer Cell-Mediated Immunotherapy for Leukemia

  Allison, M., Mathews, J., Gilliland, T. & Mathew, S. O., 1 Feb 2022, In: Cancers. 14, 3, 843.

  Research output: Contribution to journal › Article › peer-review

  • Natural Killer Cells 100%
  • Leukemia 100%
  • Cellular Immunotherapy 100%
  • Natural Killer Cell 100%
  • Immunotherapy 100%

• Thymic involution perturbs negative selection leading to autoreactive T cells that induce chronic inflammation

  Coder, B. D., Wang, H., Ruan, L. & Su, D. M., 15 Jun 2015, In: Journal of Immunology. 194, 12, p. 5825-5837 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Chronic Inflammation 100%
  • Thymic Involution 100%
  • Negative Selection 100%
  • Autoreactive T Cells 100%
  • T Cell 100%

• Cutting edge: Lectin-like transcript-1 is a ligand for the inhibitory human NKR-P1A receptor

  Rosen, D. B., Bettadapura, J., Alsharifi, M., Mathew, P. A., Warren, H. S. & Lanier, L. L., 15 Dec 2005, In: Journal of Immunology. 175, 12, p. 7796-7799 4 p.

  Research output: Contribution to journal › Article › peer-review

  • Lectin-like 100%
  • NKR-P1A 100%
  • Receptor 100%
  • Lectin 100%
  • T-Cells 100%

• Nanoparticle effects on human platelets in vitro: A comparison between PAMAM and triazine dendrimers

  Enciso, A. E., Neun, B., Rodriguez, J., Ranjan, A. P., Dobrovolskaia, M. A. & Simanek, E. E., Apr 2016, In: Molecules. 21, 4, 428.

  Research output: Contribution to journal › Article › peer-review

  • Triazine Dendrimer 100%
  • PAMAM Dendrimer 100%
  • Human Platelets 100%
  • Effects on Humans 100%
  • Nanoparticles Effect 100%

• Combination of Small Extracellular Vesicle-Derived Annexin A2 Protein and mRNA as a Potential Predictive Biomarker for Chemotherapy Responsiveness in Aggressive Triple-Negative Breast Cancer

  Desai, P. P., Narra, K., James, J. D., Jones, H. P., Tripathi, A. K. & Vishwanatha, J. K., Jan 2023, In: Cancers. 15, 1, 212.

  Research output: Contribution to journal › Article › peer-review

  • Annexin A2 (ANXA2) 100%
  • Annexin 100%
  • Predictive Biomarker 100%
  • Triple-negative Breast Cancer 100%
  • Small Extracellular Vesicles 100%

• Role of N-acetylglucosamine within core lipopolysaccharide of several species of Gram-negative bacteria in targeting the DC-SIGN (CD209)

  Zhang, P., Snyder, S., Feng, P., Azadi, P., Zhang, S., Bulgheresi, S., Sanderson, K. E., He, J., Klena, J. & Chen, T., 15 Sep 2006, In: Journal of Immunology. 177, 6, p. 4002-4011 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Lipopolysaccharide 100%
  • Gram-negative Bacteria 100%
  • N-acetylglucosamine 100%
  • CD209 100%
  • DC-SIGN 100%

• Mystery solved: The identification of the two missing Romanov children using DNA analysis

  Coble, M. D., Loreille, O. M., Wadhams, M. J., Edson, S. M., Maynard, K., Meyer, C. E., Niederstätter, H., Berger, C., Berger, B., Falsetti, A. B., Gill, P., Parson, W. & Finelli, L. N., 11 Mar 2009, In: PLoS ONE. 4, 3, e4838.

  Research output: Contribution to journal › Article › peer-review

  • DNA Analysis 100%
  • Graves 100%
  • Romanov 100%
  • Mystery 100%
  • DNA Determination 100%

• Arguments for a different regulatory categorization and framework for stromal vascular fraction

  Rodriguez, R. L., Frazier, T., Bunnell, B. A., Mouton, C. A., March, K. L., Katz, A. J., Rubin, J. P., Llull, R., Sørensen, J. A. & Gimble, J. M., 1 Mar 2020, In: Stem Cells and Development. 29, 5, p. 257-262 6 p.

  Research output: Contribution to journal › Article › peer-review

  • Clinical Translation 100%
  • Stromal Vascular Fraction 100%
  • Adipose Tissue 100%
  • Classification 100%
  • Regenerative Medicine 50%

• Novel gene C17orf37 in 17q12 amplicon promotes migration and invasion of prostate cancer cells

  Dasgupta, S., Wasson, L. M., Rauniyar, N., Prokai, L., Borejdo, J. & Vishwanatha, J. K., 13 Aug 2009, In: Oncogene. 28, 32, p. 2860-2872 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Amplicon 100%
  • Novel Genes 100%
  • Prostate Cancer Cells 100%
  • Cancer Cell 100%
  • Prostate Cancer 100%

• A sustained release formulation of chitosan modified PLCL:poloxamer blend nanoparticles loaded with optical agent for animal imaging

  Ranjan, A. P., Zeglam, K., Mukerjee, A., Thamake, S. & Vishwanatha, J. K., 22 Jul 2011, In: Nanotechnology. 22, 29, 295104.

  Research output: Contribution to journal › Article › peer-review

  • Nanoparticles 100%
  • Chitosan 100%
  • Lactide 100%
  • Optical Clearing Agents 100%
  • Poloxamer 100%