Microbiology, Immunology & Genetics

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  • 2022

    Center-Based iPSC Colony Counting with Multi-Task Learning

    Sami, M. T., Yan, D., Joy, B. R., Khalil, J., Cevallos, R., Hossain, M. E., Hu, K. & Zhou, Y., 2022, Proceedings - 22nd IEEE International Conference on Data Mining, ICDM 2022. Zhu, X., Ranka, S., Thai, M. T., Washio, T. & Wu, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1173-1178 6 p. (Proceedings - IEEE International Conference on Data Mining, ICDM; vol. 2022-November).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2016

    Multi-pulse pumping for far-field super-resolution imaging

    Requena, S., Raut, S., Doan, H., Kimball, J., Fudala, R., Borejdo, J., Gryczynski, I., Strzhemechny, Y. & Gryczynski, Z., 1 Jan 2016, Single Molecule Spectroscopy and Superresolution Imaging IX. Enderlein, J., Gregor, I., Gryczynski, Z. K., Erdmann, R. & Koberling, F. (eds.). SPIE, 97140F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9714).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Novel plasmonic platform for ultra-sensitive detection and diagnostics

    Raut, S. L., Rich, R., Shtoyko, T., Requena, S., Bora, I., Laursen, B. W., Sørensen, T. J., Borejdo, J., Gryczynski, Z. & Gryczynski, I., 1 Jan 2016, Single Molecule Spectroscopy and Superresolution Imaging IX. Enderlein, J., Gregor, I., Gryczynski, Z. K., Erdmann, R. & Koberling, F. (eds.). SPIE, Vol. 9714. 971419

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2014

    Benefits of accurate imputations in GWAS

    Verma, S. S., Peissig, P., Cross, D. S., Waudby, C., Brilliant, M., McCarty, C. A. & Ritchie, M. D., 1 Jan 2014, Applications of Evolutionary Computation - 17th European Conference, EvoApplications 2014, Revised Selected Papers. Esparcia-Alcázar, A. I. (ed.). Springer Verlag, p. 877-889 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8602).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations

  • ConA-based glucose sensing using the long-lifetime azadioxatriangulenium fluorophore

    Cummins, B., Simpson, J., Gryczynski, Z., Sørensen, T. J., Laursen, B. W., Graham, D., Birch, D. & Coté, G., 2014, Optical Diagnostics and Sensing XIV: Toward Point-of-Care Diagnostics. SPIE, 89510A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8951).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Fluorescent nanodiamonds for ultrasensitive detection

    Kimball, J., Shumilov, D., Maliwa, B., Zerda, T. W., Rout, B., Fudala, R., Raut, S. L., Gryczynski, I., Simanek, E., Borejdo, J., Rich, R., Akopova, I. & Gryczynski, Z., 1 Jan 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, 89501H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8950).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Simple multipulse excitation for enhanced detection of long-lived fluorophores

    Kimball, J., Shumilov, D., Fudala, R., Raut, S. L., Gryczynski, I., Borejdo, J., Akopova, I., Grygorczyk, R. & Gryczynski, Z., 1 Jan 2014, Single Molecule Spectroscopy and Superresolution Imaging VII. SPIE, Vol. 8950. 895005

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2013

    Detection of hyaluronidase activity using fluorescence lifetime correlation spectroscopy to separate diffusing species and eliminate autofluorescence

    Rich, R. M., Mummert, M., Gryczynski, Z., Borejdo, J., Gryczynski, I., Sørensen, T. J., Laursen, B. W. & Fudala, R., 28 May 2013, Single Molecule Spectroscopy and Superresolution Imaging VI. 859003. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8590).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Generation of transgene-free iPSC lines from human normal and neoplastic blood cells using episomal vectors

    Hu, K. & Slukvin, I., 2013, Pluripotent Stem Cells: Methods and Protocols. Lakshmipathy, U. & Vemuri, M. (eds.). p. 163-176 14 p. (Methods in Molecular Biology; vol. 997).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    21 Scopus citations
  • 2011

    Bio-composites of Sesbania herbacea plant fibers/polyvinyl alcohol (PVA): Effect of chemical retting

    Vidhate, S., Stevens, K., Ayre, B., Allen, M. & D'Souza, N., 22 Aug 2011, 69th Annual Technical Conference of the Society of Plastics Engineers 2011, ANTEC 2011. p. 188-192 5 p. (Annual Technical Conference - ANTEC, Conference Proceedings; vol. 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 2010

    Acronym extraction using SVM with Uneven Margins

    Ni, W., Liu, T., Xu, J., Huang, Y. & Ge, J., 2010, Proceedings - 2010 IEEE 2nd Symposium on Web Society, SWS 2010. p. 132-138 7 p. 5607463. (Proceedings - 2010 IEEE 2nd Symposium on Web Society, SWS 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    8 Scopus citations

  • Decoupled adaptive control of glucose and dissolved oxygen for fed-batch methionine production using linear reference model

    Ranjan, A. P. & Gomes, J., 2010, Proceedings of the 2010 American Control Conference, ACC 2010. IEEE Computer Society, p. 5862-5867 6 p. 5530515. (Proceedings of the 2010 American Control Conference, ACC 2010).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    3 Scopus citations

  • Depolarized scattering of silver nanostructures in dye-less sensing

    Sarkar, P., Shtoyko, T., Luchowski, R., Calander, N., Roth, A., Brun-Zinkernagel, A. M., Gryczynski, Z. & Gryczynski, I., 3 May 2010, Nanoscale Imaging, Sensing, and Actuation for Biomedical Applications VII. 75740V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7574).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 2008

    Fluorescence enhancement on silver nanostructures: Studies of components of ribosomal translation in vitro

    Mandecki, W., Bharill, S., Borejdo, J., Cabral, D., Cooperman, B. S., Farrell, I., Fetter, L., Goldman, E., Gryczynski, Z., Jakubowski, H., Liu, H., Luchowski, R., Matveeva, E., Pan, D., Qin, H., Tennant, D. & Gryczynski, I., 2008, Single Molecule Spectroscopy and Imaging. 68620T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6862).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations
  • 2007

    New surface plasmons approach to Single Molecule Detection (SMD) and Fluorescence Correlation Spectroscopy (FCS)

    Gryczynski, Z., Gryczynski, I., Matveeva, E. G., Calander, N., Grygorczyk, R., Akopova, I., Bharill, S., Muthu, P., Klidgar, S. & Borejdo, J., 2007, Ultrasensitive and Single-Molecule Detection Technologies II. 64440G. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6444).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    4 Scopus citations

  • Substrate trajectory tracking for methionine production in a fed-batch bioreactor using nonlinear adaptive control

    Ranjan, A. P. & Gomes, J., 1 Dec 2007, Proceedings of the 26th IASTED International Conference on Modelling, Identification, and Control, MIC 2007. p. 271-276 6 p. (Proceedings of the IASTED International Conference on Modelling, Identification, and Control, MIC).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 2006

    A genomic level analysis of alcohol producing pathways of Zymomonas mobilis

    Ranjan, A. P., Prasad, C. S., Agarwal, G. P. & Ramachandran, S., 2006, ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering. p. 471-474 4 p. 4155947. (ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Nanoplasmonic platforms for bioassays

    Gryczynski, Z., Matveeva, E., Shtoyko, T., Goldys, E., Schetz, J., Borejdo, J., Calander, N. & Gryczynski, I., 1 Dec 2006, Proceedings of International Symposium on Biophotonics, Nanophotonics and Metamaterials, Metamaterials 2006. 1 p. 4134787. (Proceedings of International Symposium on Biophotonics, Nanophotonics and Metamaterials, Metamaterials 2006).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 1999

    Fluorescence sensing of glucose

    Tolosa, L., Gryczynski, I., Randers-Eichhorn, L., Dattelbaum, J., Rao, G. & Lakowicz, J. R., 1 Jan 1999, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, p. 46-51 6 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 3602).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Novel methods for fluorescence sensing

    Lakowicz, J. R., Gryczynski, I., Gryczynski, Z., Dattelbaum, J. D., Tolosa, L. & Rao, G., 1 Jan 1999, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, p. 234-243 10 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 3602).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    11 Scopus citations

  • Preliminary studies on the use of modulation sensing for non-invasive monitoring of drug compliance

    Abugo, O. O., Gryczynski, Z. & Lakowicz, J. R., 1 Jan 1999, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, Vol. 3602. p. 297-308 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • 1992

    Advances in frequency-domain fluorometry, gigahertz instrumentation, time-dependent photomigration, and fluorescence lifetime imaging

    Lakowicz, J. R., Gryczynski, I., Szmacinski, H., Nowaczyk, K. & Johnson, M. L., 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 227-243 17 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1599).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Detection of a distance-dependent rate of quenching by frequency-domain fluorometry

    Kusba, J., Gryczynski, I., Szmacinski, H., Johnson, M. L. & Lakowicz, J. R., 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 46-57 12 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1640).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Effect of molecular ordering on distance distributions of flexible donor-acceptor pairs

    Gryczynski, I., Gryczynski, Z., Wiczk, W. M., Kusba, J. & Lakowicz, J. R., 1 Jan 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, Vol. 1640. p. 622-631 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    7 Scopus citations

  • Emission lifetimes of human hemoglobin computed from the atomic coordinates

    Gryczynski, Z., Tenenholz, T. & Bucci, E., 1 Jan 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 550-555 6 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1640).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Fluorescence intensity and anisotropy decays of the intrinsic tryptophan emission of hemoglobin measured with a 10-GHz fluorometer using front-face geometry on free liquid surface

    Bucci, E., Gryczynski, Z., Fronticelli, C., Gryczynski, I. & Lakowicz, J. R., 1 Jan 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 556-561 6 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1640).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Heme-tryptophan relationships in hemoglobin explored by frequency-domain time-resolved fluorescence at 10-GHz resolution

    Bucci, E., Gryczynski, Z., Gratton, E. & Tenenholz, T., 1 Jan 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 784-791 8 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1640).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Site-to-site diffusion in proteins as observed by energy transfer and frequency-domain fluorometry

    Lakowicz, J. R., Gryczynski, I., Kusba, J., Wiczk, W. M., Szmacinski, H. & Johnson, M. L., 1992, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 196-211 16 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1640).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 1991

    Frequency-domain fluorescence spectroscopy: instrumentation and applications to the biosciences (Keynote Paper)

    Lakowicz, J. R., Gryczynski, I., Malak, H., Johnson, M. L., Laczko, G., Wiczk, W. M., Szmacinski, H. & Kusba, J., 1991, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 142-160 19 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1435).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations
  • 1990

    Fluorescence and conformational stability studies of S. nuclease A and its site directed mutants

    Eftink, M. R., Ghiron, C. A., Gryczynski, I., Wiczk, W., Laczko, G. & Lakowicz, J. R., 1 Dec 1990, Proceedings of SPIE - The International Society for Optical Engineering. Lakowicz, J. F. (ed.). Publ by Int Soc for Optical Engineering, Vol. 1204 pt 1. p. 137-143 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations

  • Influence of end-to-end diffusion on intramolecular energy transfer as observed by frequency-domain fluorometry

    Lakowicz, J. R., Wiczk, W., Gryczynski, I., Szmacinski, H. & Johnson, M. L., 1990, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 554-569 16 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1204 pt 2).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Influence of oligopeptide flexibility on donor-acceptor distance distribution by frequency-domain fluorescence spectroscopy

    Lakowicz, J. R., Wiczk, W., Gryczynski, I. & Johnson, M. L., 1990, Proceedings of SPIE - The International Society for Optical Engineering. Publ by Int Soc for Optical Engineering, p. 192-205 14 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1204 pt 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    6 Scopus citations

  • Phase-modulation fluorometry using a frequency-doubled pulsed laser diode light source

    Berndt, K. W., Gryczynski, I. & Lakowicz, J. R., 1 Dec 1990, Proceedings of SPIE - The International Society for Optical Engineering. Lakowicz, J. F. (ed.). Publ by Int Soc for Optical Engineering, p. 253-261 9 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1204 pt 1).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    2 Scopus citations
  • 1987

    2 GHz FREQUENCY-DOMAIN FLUOROMETER; PICOSECOND RESOLUTION OF TYROSINE FLUORESCENCE AND ANISOTROPY DECAYS.

    Lakowicz, J. R., Laczko, G., Gryczynski, I. & Cherek, H., 1 Dec 1987, Proceedings of SPIE - The International Society for Optical Engineering. Joffe, S. N., Parrish, J. A. & Scott, R. S. (eds.). SPIE, Vol. 712. p. 110-116 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    1 Scopus citations