Microbiology, Immunology & Genetics

Research output

Research output per year 1973 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023

• 103442 Citations
• 134 h-index
• 2097 Article
• 164 Review article
• 66 Chapter
• 48 Comment/debate
• 138 More
  • 41 Letter
  • 34 Conference contribution
  • 25 Conference article
  • 17 Editorial
  • 16 Short survey
  • 3 Foreword/postscript
  • 1 Book
  • 1 Paper

Research output per year

Research output per year

Search results

• Genetic composition of six miniSTR in a Brazilian Mulatto sample population

  Aranda, X. G., Lage, C. A. C., Planz, J. V., Eisenberg, A. J., Moura-Neto, R. S. & Silva, R., May 2011, In: Journal of Forensic and Legal Medicine. 18, 4, p. 184-186 3 p.

  Research output: Contribution to journal › Article › peer-review

  • Forensic Genetics 100%
  • Forensic Anthropology 82%
  • Population 24%
  • discrimination 23%
  • exclusion 23%

• Use of woody ground litter as a substrate for travel by the white-footed mouse, Peromycus leucopus

  Planz, J. V. & Kirkland, G. L., 1 May 1999, NCASI Technical Bulletin. 781 ed. NCASI, Vol. 2. p. 420-421 2 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Pigments 100%
  • litter 75%
  • travel 73%
  • Substrates 56%
  • substrate 54%

• New host and locality records of coccidia (Apicomplexa: Eimeriidae) from rodents in the southwestern and western United States

  McAllister, C. T., Upton, S. J., Planz, J. V. & DeWalt, T. S., 1991, In: Journal of Parasitology. 77, 6, p. 1016-1019 4 p.

  Research output: Contribution to journal › Comment/debate

  • Eimeriidae 100%
  • Coccidia 78%
  • Southwestern United States 74%
  • Eimeria 74%
  • Apicomplexa 73%

• Genetic data for D1S1677, D2S441, D4S2364, D10S1248, D14S1434 and D22S1045 miniSTR loci from Libya

  Aranda, X. G., Moura-Neto, R. S., Al-Deib, A. A., Aboud, A. I., Planz, J. V., Eisenberg, A. J. & Silva, R., Jul 2010, In: Forensic Science International: Genetics. 4, 4, p. 267-268 2 p.

  Research output: Contribution to journal › Letter › peer-review

• Development of a genotyping assay for the UK, European, and CODIS core STR loci identifying length and sequence variation in the target loci

  Duncan, D. D., Boles, K. M., Planz, J. V., Hofstadler, S. A. & Hall, T. A., Dec 2011, In: Forensic Science International: Genetics Supplement Series. 3, 1, p. e267-e268

  Research output: Contribution to journal › Article › peer-review

  • Microsatellite Repeats 100%
  • Base Composition 54%
  • Polymerase Chain Reaction 42%
  • Species Specificity 33%
  • Electrospray Ionization Mass Spectrometry 32%

• Hidden variation in microsatellite loci: Utility and implications for forensic DNA

  Planz, J. V. & Hall, T. A., 19 Aug 2013, Forensic DNA Analysis: Current Practices and Emerging Technologies. Taylor and Francis, p. 199-220 22 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Microsatellite Repeats 100%
  • Alleles 59%
  • demographic situation 54%
  • DNA 52%
  • discrimination 35%

• Preconditioning-induced CXCL12 upregulation minimizes leukocyte infiltration after stroke in ischemia-Tolerant mice

  Selvaraj, U. M., Ortega, S. B., Hu, R., Gilchrist, R., Kong, X., Partin, A., Plautz, E. J., Klein, R. S., Gidday, J. M. & Stowe, A. M., 1 Mar 2017, In: Journal of Cerebral Blood Flow and Metabolism. 37, 3, p. 801-813 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Leukocytes 100%
  • Ischemia 95%
  • Up-Regulation 91%
  • Stroke 86%
  • plerixafor octahydrochloride 52%

• Quantification of neurovascular protection following repetitive hypoxic preconditioning and transient middle cerebral artery occlusion in mice

  Poinsatte, K., Selvaraj, U. M., Ortega, S. B., Plautz, E. J., Kong, X., Gidday, J. M. & Stowe, A. M., 4 May 2015, In: Journal of Visualized Experiments. 2015, 99, e52675.

  Research output: Contribution to journal › Article › peer-review

  • Blood-Brain Barrier 100%
  • Neurology 67%
  • Middle Cerebral Artery Infarction 62%
  • Evans Blue 59%
  • Stroke 38%

• The disease-ameliorating function of autoregulatory CD8 T cells is mediated by targeting of encephalitogenic CD4 T cells in experimental autoimmune encephalomyelitis

  Ortega, S. B., Kashi, V. P., Tyler, A. F., Cunnusamy, K., Mendoza, J. P. & Karandikar, N. J., 1 Jul 2013, In: Journal of Immunology. 191, 1, p. 117-126 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Autoimmune Experimental Encephalomyelitis 100%
  • T-Lymphocytes 52%
  • Demyelinating Diseases 12%
  • Multiple Sclerosis 10%
  • Myelin-Oligodendrocyte Glycoprotein 8%

• Single dose of glycoengineered anti-CD19 antibody (MEDI551) disrupts experimental autoimmune encephalomyelitis by inhibiting pathogenic adaptive immune responses in the bone marrow and spinal cord while preserving peripheral regulatory mechanisms

  Chen, D., Blazek, M., Ireland, S., Ortega, S., Kong, X., Meeuwissen, A., Stowe, A., Carter, L., Wang, Y., Herbst, R. & Monson, N. L., 15 Nov 2014, In: Journal of Immunology. 193, 10, p. 4823-4832 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Autoimmune Experimental Encephalomyelitis 100%
  • Adaptive Immunity 86%
  • Plasma Cells 85%
  • Anti-Idiotypic Antibodies 71%
  • Spinal Cord 69%

• Neuroantigen-specific CD8+ regulatory T-cell function is deficient during acute exacerbation of multiple sclerosis

  Baughman, E. J., Mendoza, J. P., Ortega, S. B., Ayers, C. L., Greenberg, B. M., Frohman, E. M. & Karandikar, N. J., Mar 2011, In: Journal of Autoimmunity. 36, 2, p. 115-124 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Regulatory T-Lymphocytes 100%
  • Multiple Sclerosis 88%
  • T-Lymphocytes 62%
  • Central Nervous System 20%
  • Healthy Volunteers 18%

• Immune regulatory CNS-reactive CD8+T cells in experimental autoimmune encephalomyelitis

  York, N. R., Mendoza, J. P., Ortega, S. B., Benagh, A., Tyler, A. F., Firan, M. & Karandikar, N. J., Aug 2010, In: Journal of Autoimmunity. 35, 1, p. 33-44 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Autoimmune Experimental Encephalomyelitis 100%
  • T-Lymphocytes 52%
  • Multiple Sclerosis 16%
  • Perforin 12%
  • Demyelinating Diseases 9%

• High prevalence of autoreactive, neuroantigen-specific CD8⁺ T cells in multiple sclerosis revealed by novel flow cytometric assay

  Crawford, M. P., Yan, S. X., Ortega, S. B., Mehta, R. S., Hewitt, R. E., Price, D. A., Stastny, P., Douek, D. C., Koup, R. A., Racke, M. K. & Karandikar, N. J., 1 Jun 2004, In: Blood. 103, 11, p. 4222-4231 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Multiple Sclerosis 100%
  • Flow 72%
  • T-Lymphocytes 70%
  • Central Nervous System 41%
  • Relapsing-Remitting Multiple Sclerosis 17%

• In Vitro Methotrexate as a Practical Approach to Selective Allodepletion

  Sathe, A., Ortega, S. B., Mundy, D. I., Collins, R. H. & Karandikar, N. J., Jun 2007, In: Biology of Blood and Marrow Transplantation. 13, 6, p. 644-654 11 p.

  Research output: Contribution to journal › Article › peer-review

  • Graft vs Host Disease 100%
  • Methotrexate 91%
  • Mixed Lymphocyte Culture Test 59%
  • T-Lymphocytes 58%
  • Transplants 44%

• A Pilot Study Identifying Brain-Targeting Adaptive Immunity in Pediatric Extracorporeal Membrane Oxygenation Patients with Acquired Brain Injury

  Ortega, S. B., Pandiyan, P., Windsor, J., Torres, V. O., Selvaraj, U. M., Lee, A., Morriss, M., Tian, F., Raman, L. & Stowe, A. M., 1 Mar 2019, In: Critical Care Medicine. 47, 3, p. e206-e213

  Research output: Contribution to journal › Article › peer-review

  • Extracorporeal Membrane Oxygenation 100%
  • Adaptive Immunity 86%
  • Brain Injuries 81%
  • Pediatrics 54%
  • Brain 41%

• IL-21 promotes the production of anti-DNA IgG but is dispensable for kidney damage in lyn^-/- mice

  Gutierrez, T., Mayeux, J. M., Ortega, S. B., Karandikar, N. J., Li, Q. Z., Rakheja, D., Zhou, X. J. & Satterthwaite, A. B., Feb 2013, In: European Journal of Immunology. 43, 2, p. 382-393 12 p.

  Research output: Contribution to journal › Article › peer-review

  • interleukin-21 100%
  • anti-IgG 81%
  • DNA 40%
  • Kidney 39%
  • Autoantibodies 38%

• Autoregulatory CD8 T cells depend on cognate antigen recognition and CD4/CD8 myelin determinants

  Ortega, S. B., Kashi, V. P., Cunnusamy, K., Franco, J. & Karandikar, N. J., 2015, In: Neurology: Neuroimmunology and NeuroInflammation. 2, 6, e170.

  Research output: Contribution to journal › Article › peer-review

  • CD4 Antigens 100%
  • Myelin Sheath 81%
  • T-Lymphocytes 48%
  • Autoimmune Experimental Encephalomyelitis 30%
  • Antigens 25%

• Disease exacerbation of multiple sclerosis is characterized by loss of terminally differentiated autoregulatory CD8+ T cells

  Cunnusamy, K., Baughman, E. J., Franco, J., Ortega, S. B., Sinha, S., Chaudhary, P., Greenberg, B. M., Frohman, E. M. & Karandikar, N. J., May 2014, In: Clinical Immunology. 152, 1-2, p. 115-126 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Multiple Sclerosis 100%
  • Disease Progression 90%
  • T-Lymphocytes 70%
  • perforin-granzyme B 68%
  • Central Nervous System 67%

• Transient regulatory T-cells: A state attained by all activated human T-cells

  Pillai, V., Ortega, S. B., Wang, C. K. & Karandikar, N. J., Apr 2007, In: Clinical Immunology. 123, 1, p. 18-29 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Regulatory T-Lymphocytes 100%
  • T-Lymphocytes 62%
  • Interleukin-10 12%
  • In Vitro Techniques 12%
  • Immune System 11%

• Preliminary results in the analysis of the immune response after aneurysmal subarachnoid hemorrhage

  Roa, J. A., Sarkar, D., Zanaty, M., Ishii, D., Lu, Y., Karandikar, N. J., Hasan, D. M., Ortega, S. B. & Samaniego, E. A., 1 Dec 2020, In: Scientific Reports. 10, 1, 11809.

  Research output: Contribution to journal › Article › peer-review

  • Subarachnoid Hemorrhage 100%
  • Cerebrospinal Fluid 47%
  • Flow Cytometry 31%
  • Intracranial Aneurysm 29%
  • Lymphocytes 28%

• Akt plays a critical role in replication of nonsegmented negative-stranded RNA viruses

  Sun, M., Fuentes, S. M., Timani, K., Sun, D., Murphy, C., Lin, Y., August, A., Teng, M. N. & He, B., Jan 2008, In: Journal of virology. 82, 1, p. 105-114 10 p.

  Research output: Contribution to journal › Article › peer-review

  • Mammalian orthorubulavirus 5 100%
  • Parainfluenza Virus 5 94%
  • RNA viruses 65%
  • RNA Viruses 63%
  • Respirovirus 52%

• Hepatitis C virus non-structural 5A protein can enhance full-length core protein-induced nuclear factor-κ B activation

  Liao, Q. J., Ye, L. B., Timani, K. A., She, Y. L., Yang, X. J., Ye, L. & Wu, Z. H., 7 Nov 2005, In: World Journal of Gastroenterology. 11, 41, p. 6433-6439 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Nuclear Proteins 100%
  • Hepacivirus 89%
  • Proteins 35%
  • NFI Transcription Factors 20%
  • Virus Diseases 20%

• Two cis-acting elements in negative RNA strand of hepatitis C virus involved in synthesis of positive RNA strand in vitro

  Ye, L., Timani, K. A., Ye, L., Kong, L., Yang, X., Liao, Q. & Wu, J., 1 Dec 2005, In: Acta Virologica. 49, 2, p. 83-90 8 p.

  Research output: Contribution to journal › Article › peer-review

  • Hepacivirus 100%
  • RNA 74%
  • In Vitro Techniques 47%
  • RNA Replicase 8%
  • Mutagenesis 6%

• Nuclear/nucleolar localization properties of C-terminal nucleocapsid protein of SARS coronavirus

  Timani, K. A., Liao, Q., Ye, L., Zeng, Y., Liu, J., Zheng, Y., Ye, L., Yang, X., Lingbao, K., Gao, J. & Zhu, Y., Dec 2005, In: Virus Research. 114, 1-2, p. 23-34 12 p.

  Research output: Contribution to journal › Article › peer-review

  • Nucleocapsid Proteins 100%
  • Severe Acute Respiratory Syndrome 93%
  • Coronavirus 91%
  • Cytoplasm 59%
  • Coronaviridae 42%

• Genetically engineered probiotic for the treatment of phenylketonuria (PKU); Assessment of a novel treatment in vitro and in the PAH^enu2 mouse model of PKU

  Durrer, K. E., Allen, M. S. & Von Herbing, I. H., May 2017, In: PLoS ONE. 12, 5, e0176286.

  Research output: Contribution to journal › Article › peer-review

  • Phenylketonurias 100%
  • Probiotics 82%
  • Phenylalanine 64%
  • Anabaena variabilis 36%
  • In Vitro Techniques 33%